Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq353 136 3e-27 seq21 136 3e-27 seq316 134 1e-26 seq82 109 4e-19 seq116 98.7 8e-16 >seq353 Length=2119611 Score = 136 bits (150), Expect = 3e-27 Identities = 180/246 (73%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| ||||| ||||| || || || ||| |||||| || ||||| ||| | Sbjct 1121210 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGCGGACTATATTAATCCTATCTTT 1121151 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 || |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 1121150 CAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 1121091 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 110552 ||| || ||| ||||| || || | ||||| || ||| | || | || || || Sbjct 1121090 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTCATGGTCATTCTCTGGAAATAGTTGAACTC 1121031 Query 110553 TTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT- 110610 || | || || |||| || || |||||||| || || ||||||||| ||| Sbjct 1121030 ATTCCTGAG------CGGGGGCCAGGGTAGGTCTCCGTTCTTGCCAATGCCCATGTTCTG 1120977 Query 110611 GGACAC 110616 |||||| Sbjct 1120976 GGACAC 1120971 >seq21 Length=27434213 Score = 136 bits (150), Expect = 3e-27 Identities = 180/246 (73%), Gaps = 14/246 (6%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| ||||| ||||| || || || |||||||||| || ||||||||| | Sbjct 6695960 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGAGGACTATATTAATCCTGTCTTT 6696019 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 6696020 TAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 6696079 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 110552 ||| || ||| ||||| || || | ||| | || ||| | || | || || || Sbjct 6696080 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTAATGGTCATTCTCTGGAAATACTTGAACTC 6696139 Query 110553 TTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT- 110610 || | ||| || |||| || || |||||||| || || | ||||||| ||| Sbjct 6696140 ATTCCTGAGT------GGGGGCCAGGGTAGGTCTCCGTTCTTGCCAACGCCCATGTTCTG 6696193 Query 110611 GGACAC 110616 |||||| Sbjct 6696194 GGACAC 6696199 >seq316 Length=2809289 Score = 134 bits (148), Expect = 1e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || || Sbjct 1685910 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGG 1685969 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 ||||| || |||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 1685970 CACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCAC 1686029 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||| ||||| || | ||| ||||| || || || ||||| Sbjct 1686030 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| ||| | || |||||||| |||||||||||||| || ||||| || || ||||| | Sbjct 1689903 TCATATCCTTATATTCTGCTCCAAAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGAT 1689962 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || | | || ||| ||||||||||||| | ||| || ||||| | Sbjct 1689963 CTCCTTCATCTCGGGTGGAAAATCCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCAT 1690022 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||||||| || || ||| ||||| || | || ||||| || Sbjct 1690023 CCCAGATCTTTACGCCTTTGGAAGACAGCTCCTTAGCATTGGTGGAGCC 1690071 >seq82 Length=15125257 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || |||||||||| || ||||| ||| ||| |||||||||||| || ||| Sbjct 6722612 TTGAGTTCTCTACTGAGGACTATATTAATCCTATCTTTCAAAGGTCTATTCTTCTCAGGG 6722671 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 6722672 ATGGAGAACCAGGTCTTCCTACCCATGATCACCAAATTCTGTTTCCCT 6722719 >seq116 Length=11478430 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 110392 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTA-TCCTGTCTCTCAGAGGTCTATT 110450 ||| | ||||| || || || |||||||||| ||| |||||||| ||| || |||||| Sbjct 10967676 GGGAGTTCTTTGAGTTCTCTACTGAGGACTAGTATTAATCCTGTCTTTCAAAGATCTATT 10967617 Query 110451 CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCT 110510 ||| || ||||||||||||| || ||| || |||| ||||||| ||||| || || Sbjct 10967616 CTTCTCAGGGATGGAGAACC-AGGCTTCCTCCCCAAAATCACCAAATTCTGTTTCACTTC 10967558 Query 110511 GACTGAAGACGTAGCGGTCAAGG 110533 ||||| || || | ||||| || Sbjct 10967557 TACTGAGGAGGTTGTGGTCATGG 10967535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406266981670656