Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq132 125 6e-24 seq118 113 4e-20 seq145 107 2e-18 seq23 105 6e-18 seq196 104 2e-17 seq109 95.1 1e-14 seq281 89.7 4e-13 seq16 87.8 2e-12 seq296 86.0 5e-12 seq44 84.2 2e-11 seq95 82.4 7e-11 seq52 82.4 7e-11 >seq132 Length=9596125 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || |||||||| || || || Sbjct 5547506 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAAT 5547447 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||| ||| |||||| ||||| ||||||||||| ||||| || || || || Sbjct 5547446 GACACCATTAAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 5547387 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 |||| | | |||| || |||||||| | || || || || || | || | ||||| Sbjct 5547386 CAGCATCTCATATTTGCGGGCAAACAGCTAGAGGA-TGTCCGTACACTCTCAGGCTACAA 5547328 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | ||| |||| | ||| |||| ||||| || Sbjct 5547327 CATGCAGAAAGAGTCCACCCTGCATCTGGTGCTACGTCTGCGTGGTGGTAT 5547277 >seq118 Length=10455207 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| | ||||||| |||||| | | |||||||| || || || Sbjct 9349695 ATGCAGATCTTTGTGGAGACTCTGAATGGCAAGACCACCACTCTTGAGGTCGAGCCCAGT 9349754 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| ||||||| | ||||| || || || || Sbjct 9349755 GACACCATCGAGAATGTCAAAGCCAAAATCTAAGACAAGAAGGGCATCCCTCCTGACCAG 9349814 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||||||||||| | || || || ||| | | || ||||| Sbjct 9349815 CAGCGTCTGATATTTGCCGGCAAACAGCTAGAGGATGATTGGACGCTCCCAGACCACAAC 9349874 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||| ||| | ||| |||| ||||| |||| |||||||| Sbjct 9349875 ATCCAGAAAGAGGGCACCCTGCATCTGGTGCTGCGTCTGCGTGGTGGCAT 9349924 >seq145 Length=8547294 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || || ||| | || | || || || ||||| || Sbjct 6751050 ATGCAGATTTTTGTAAAAACCCTCACGGGGAAGACCATCATGCTCGAGGTTGAACCCTCG 6750991 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 6750990 GACACAATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 6750931 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | |||| | || || |||||| Sbjct 6750930 CAGAGACTCATCTTTGCTGGAAAACAGCTGGAAGATGGGCGGACCCTGTCTGACTACAAC 6750871 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 6750870 ATCCACAAGGAGTCCAC 6750854 >seq23 Length=27005232 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | ||||||||||| || || || Sbjct 21391610 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACTCTTGAGGTCGAGCCCAGT 21391551 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| | ||||||||||| ||||| || || | ||| Sbjct 21391550 GACACCATCGAGAATGTCAAAGCCAAACTCCAAGACAAAGAGGGCATTCCCCCTAACCAA 21391491 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA--CAGTTCGACCGTTTCCGATTACA 27165 || || | ||| || |||||| | | || || | || || | || || |||| Sbjct 21391490 CAATGTCTGTTATTTGCTGGCAAATAGCTAGAGGACGCCTGTCTAC--TCTCTGACTACA 21391433 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | || || || ||||| ||||| | | |||| ||||| ||| ||||| Sbjct 21391432 ATATCCAGAAAGAGTCCACCTTGCTTGTGGTGCTGCGTCTGCATGGTGG 21391384 >seq196 Length=6454996 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || |||| ||| || || || Sbjct 1585317 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCCTGAGGTCGAGCCCAGT 1585258 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || ||| |||||| ||||||||||||| || ||||| || || || || Sbjct 1585257 GACACCATCAAGAATGTCAAAGCCAAAATTCAAGACAGGGAGGGCATCCCTCCTGACCAG 1585198 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| || |||||||| | || || | || | || || |||||| Sbjct 1585197 CAGCGTCTGATATTTGCAGGCAAACAGCTAGAGGATGGCCATACACTCTCAGACTACAAC 1585138 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | |||| ||| | ||| |||| ||| | | |||||||| Sbjct 1585137 ATTCAGATAGAGTACACCCTGCATCTGGTGCTGCATCCATGTGGTGGCAT 1585088 >seq109 Length=12159667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTC---TATTACTCTTGAAGTGGAACCG 27044 |||||||| || || || || ||||| |||||| | |||||||||||| || | || Sbjct 5451738 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTATTACTCTTGAGGTTGGGCCC 5451679 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| || ||| |||||| ||||| ||||| || || | ||| || | || Sbjct 5451678 AGTGACATTATCAAGAATGTCAAAGCCAAAATCCAAGATAAGGAGGACATCCCTTCTGAC 5451619 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || |||| | | |||| || |||||||| || || || || | || || ||| Sbjct 5451618 CAGCAGCATCTGATATTTGCGGGCAAACAGCCAGAGGATGGTCATACACTCTCAGACTAC 5451559 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| ||| | ||| |||| |||| |||| |||||||| Sbjct 5451558 AACATCCAGAAAGAGTCCACCCTGCATCTGGTGCCGCGTCTGCGTGGTGGCAT 5451506 >seq281 Length=3341665 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 13/230 (6%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || | ||||| || || || | Sbjct 1931019 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCTCCCTTGAGGTTGAGCCAAGC 1930960 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACC--ACCCG--A 27103 ||| | ||||||| ||||| ||| ||||||||||||||||| || || |||| | Sbjct 1930959 GACACCATTGAGAATGTCAAGGCAAAGATTCAAGACAAAGAAGGAATCCCTATCCCGCAA 1930900 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGAC----CGTTTCCG 27159 || ||| | || || | || || ||||| | ||| || | ||| | | || | Sbjct 1930899 CCAGCAGAGATTGATCTTTGCTGGGAAACA----GCAGA-AGATGGACACATCCTGTCTG 1930845 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGG 27209 |||||||||| || || ||||| || | || ||||| || | ||| || Sbjct 1930844 ATTACAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGAGCTTGAGG 1930795 >seq16 Length=30800738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| ||||| || || ||||| | || || Sbjct 5646558 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAAATCATCACCCTTGACATTGAGCCAAGT 5646617 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||| || |||| |||||||||||| || || || || Sbjct 5646618 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGGCAAAGAAGGCATCCCCCCTGACCAG 5646677 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| ||||||| | ||| | || || |||||| Sbjct 5646678 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGACACACCCTGTCTGAATACAAC 5646737 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 || || || ||||| || | ||||| | ||| ||| ||| Sbjct 5646738 ATCCAGAAAGAGTCCACTATGGATTTGATCCTGCACTTGAGGG 5646780 >seq296 Length=2855797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || | ||| | || || || || || ||||| || Sbjct 103102 ATGCAGATTTTTGTAAAAACCCTCACAGAGAAGACCATCACGCTCGAGGTTGAACCCTCA 103043 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||||| ||||| | || || || || ||||| || | || ||||| Sbjct 103042 GACACAGTTGAGAATGTCAAGGCCCAGATCCAGGATAAGGAAGGAATTCTTCCTGATCAG 102983 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || | || || |||||| ||||||| | |||| | || || |||||| Sbjct 102982 CAAAG----ATCTTTGCTGG-AAACAACTGGAAGATGGGCGGACCTTGTCTGACTACAAC 102928 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||||||||| || Sbjct 102927 ATCCAAAAGGAGTCCAC 102911 >seq44 Length=20396770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 26992 AGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACT 27051 |||| || ||||||| || || || ||| | || || | |||| ||||| || ||| Sbjct 12728790 AGATTTTCATAAAAACCCTCACGGGGAAGACCATCACAATC-AAGTTGAACCCTCAGACA 12728848 Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 | || | || ||||| || || || || || |||||||| || || ||||| || Sbjct 12728849 CAATCGTGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAAA 12728908 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 | | || | || || || ||| ||||||| | |||| | || ||||||||||| | Sbjct 12728909 GACTCATCTTTGCTGGAAAGCAACTGGAAGATGGGCAGACCCTGTCTGATTACAACATCC 12728968 Query 27172 AAAAGGAGTCGAC 27184 |||||||||| || Sbjct 12728969 AAAAGGAGTCCAC 12728981 >seq95 Length=13545823 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || | ||||| |||||| | | |||||||| || | || Sbjct 1283 ATGCAGATTTTTGTGAAGATCCTGACTGGCAAGACCACCACTCTTGAGGTCAAGCCTAAT 1342 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCC-GATCA 27106 ||| | || ||| |||||| |||||||||||||| || ||||| || ||| || || Sbjct 1343 GACACCATCAAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATTCCCCCCTGACCA 1402 Query 27107 ACAGCGTTTAATATACGCCGGCAAACA 27133 |||| | | |||| || |||||||| Sbjct 1403 GCAGCATCTGATATTTGCAGGCAAACA 1429 >seq52 Length=18130215 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||| ||||||| || | || || || | |||| | || ||||| | Sbjct 16684507 ATGCACATTTTTCTAAAAACCCTCATGGGGAACTCCGTCACTCACAAGGTTGAACCCTTG 16684566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || || || |||||||| || || ||||| Sbjct 16684567 GACACAATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 16684626 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | | | || || |||||| |||||| | | || | | || || |||||| Sbjct 16684627 CAAAGACTCACCTTTGCTGGAAAACAACTGGAAGGTGGGTGGATCCTGTCTGACTACAAC 16684686 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||||||||| || || | | |||||| Sbjct 16684687 ATCCAAAAGGAGTCCACTTTTTACCTTGTTTTG 16684719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434870732943360