Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq316 147 2e-30 seq132 104 2e-17 >seq316 Length=2809289 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| |||||||| | ||| Sbjct 1685923 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACCCCCAGGCCC 1685982 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||| ||||| || || |||||| | |||||||| ||| Sbjct 1685983 ATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCACCACGTAGAACTGG 1686042 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||| || || || |||||| |||| || || Sbjct 1686043 CAAAGGGCATGGCAGGGTGGCAGGGCCATCTGAGGAAGGTC 1686083 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || |||| |||||| || || || ||||| |||| ||||| |||||||| | |||| Sbjct 1686083 GACCTTCCTCAGATGGCCCTGCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAAT 1686024 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || || ||||| ||||| || || | || ||||||||||| | |||||||| ||| Sbjct 1686023 GGTGAACTCTCCTGTCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTGCCTTTC 1685964 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 1685963 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 1685923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || || ||||| || |||||||| || |||||||| ||||||| || || || || Sbjct 1689913 ATATTCTGCTCCAAAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGATCTCCTTCATC 1689972 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | | || ||| | |||||| |||||| || || || | || ||||||||||| Sbjct 1689973 TCGGGTGGAAAATCCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCATCCCAGATCTT 1690032 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || ||| || |||||||| | || |||| Sbjct 1690033 TACGCCTTTGGAAGACAGCTCCTTAGCATTGGTGG 1690067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | |||||||| || ||| || || ||||||||||| || | || || | Sbjct 1690067 CCACCAATGCTAAGGAGCTGTCTTCCAAAGGCGTAAAGATCTGGGATGCCAATGGATCCC 1690008 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 | |||||| |||||| | ||| || | | || || || || || ||||||| |||| Sbjct 1690007 GTGACTTTTTGGACAGCCTGGGATTTTCCACCCGAGATGAAGGAGATCTGGGCCCTGTCT 1689948 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||| || |||||||| || ||||| || || ||| Sbjct 1689947 ACGGCTTTCAGTGGAGGCATTTTGGAGCAGAATAT 1689913 >seq132 Length=9596125 Score = 104 bits (114), Expect = 2e-17 Identities = 347/538 (64%), Gaps = 39/538 (7%) Strand=Plus/Plus Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 ||||| | |||||||| || | || ||||| ||||| ||||||| | |||||||||| Sbjct 8761782 TCATGCAGGTGAGCAGGGCACAGCTGGCAATATTGAAAAGCACCCCCAGGCCCATGTCTC 8761841 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGG 6746 | || || || |||||||||||||| | | | | | | |||||| ||||| |||| Sbjct 8761842 CGGACTTCTGGTAAAGCTGGCAGGACAGGGCACTGTCCACCATGTAGAAGTGGCA-AGGG 8761900 Query 6747 T-GTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 | ||||| | || | || ||| |||| | | || | ||||| | ||||| | Sbjct 8761901 TCATGGCAGGATGGCATGGCGATCTGAGGATGGCCTTTTGAATTCCAAGTACACATGATC 8761960 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCT 6865 | || | ||||||||| | |||| ||||| || | || |||||| | || Sbjct 8761961 AATCTCCGGTCATCAGGTT-----TTCATTGTGTC---AACCTTTTGTAGCTGGCCTACT 8762012 Query 6866 CCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 | || || ||||| ||| | | || ||| || ||||||| | |||||||| Sbjct 8762013 CATTGGCCTGAATAATCCAAATTCATATCCTTATATTCTTCCCCAAAATACCTCCACTGA 8762072 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 || | |||| || || || | | || | || ||| | |||||||| Sbjct 8762073 AAGTCATAGA-----------TCTCCTTCTT---GGGAGGAAAATCCCAGGGTGTCCAGA 8762118 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTG 7045 | ||||| ||||| | || | | |||||||||| || ||| || |||||||| | Sbjct 8762119 ATGTCTCAGGACCCAT-AG-GCCTTAGATCTTCACATCCTTGGAAGACAGCTCCTTAGAT 8762176 Query 7046 TTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGT 7105 | |||| || || | ||| |||||| | || ||||| ||||||| Sbjct 8762177 CTGGTGGAGCCACTGATAAACGACAGCA-------------GACCCTCCAGAACACACGC 8762223 Query 7106 TTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACA 7163 || || ||| ||| ||||| || || ||| |||| | |||| |||||||| Sbjct 8762224 TTGGTGCTCAACAGAGGAAACTCATTCCTCAGGCTGTAACACTCCTGCACGCCGAACA 8762281 Score = 104 bits (114), Expect = 2e-17 Identities = 347/538 (64%), Gaps = 39/538 (7%) Strand=Plus/Minus Query 34182 TGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAAC 34241 |||||||| |||| | |||| ||| || || ||||| ||| ||| || || | Sbjct 8762281 TGTTCGGCGTGCAGGAGTGTTACAGCCTGAGGAATGAGTTTCCTCTGTTGAGCACCAAGC 8762222 Query 34242 GTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACA 34301 |||||| ||||| || | |||||| ||| | || || |||| | Sbjct 8762221 GTGTGTTCTGGAGGGTC-------------TGCTGTCGTTTATCAGTGGCTCCACCAGAT 8762175 Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 | |||||||| || ||| || |||||||||| | | || | ||||| ||||| ||| Sbjct 8762174 CTAAGGAGCTGTCTTCCAAGGATGTGAAGATCTAAGGC-CT-ATGGGTCCTGAGACATTC 8762117 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||| | ||| || | || | | || || || |||| | || | Sbjct 8762116 TGGACACCCTGGGATTTTCCTCCC---AAGAAGGAGA-----------TCTATGACTTTC 8762071 Query 34422 AGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAG 34481 ||||||| | ||||||| || ||| || | | ||| ||||| || || ||| Sbjct 8762070 AGTGGAGGTATTTTGGGGAAGAATATAAGGATATGAATTTGGATTATTCAGGCCAATGAG 8762011 Query 34482 CGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCG 34541 | |||||| || | || ||||| |||| | ||||||||| | || | Sbjct 8762010 TAGGCCAGCTACAAAAGGTT---GACACAATGAA-----AACCTGATGACCGGAGATTGA 8761959 Query 34542 TGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCAC-ACC 34600 | ||||| | ||||| | || | | |||| ||| || | || | ||||| ||| Sbjct 8761958 TCATGTGTACTTGGAATTCAAAAGGCCATCCTCAGATCGCCATGCCATCCTGCCATGACC 8761899 Query 34601 CTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGA 34660 || ||||| |||||| | | | | | | |||||||||||||| || || || ||| Sbjct 8761898 CT-TGCCACTTCTACATGGTGGACAGTGCCCTGTCCTGCCAGCTTTACCAGAAGTCCGGA 8761840 Query 34661 GACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGA 34718 |||||||| | ||||||| ||||| ||||| || | || |||||||| | ||||| Sbjct 8761839 GACATGGGCCTGGGGGTGCTTTTCAATATTGCCAGCTGTGCCCTGCTCACCTGCATGA 8761782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448213270440960