Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq21 199 3e-46 seq353 194 1e-44 seq118 109 5e-19 >seq21 Length=27434213 Score = 199 bits (220), Expect = 3e-46 Identities = 383/556 (69%), Gaps = 19/556 (3%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||| || || | | ||| || | || |||||| |||| || || ||| | || || Sbjct 6696217 CTAAATTGCATCGTTGATGTGTCCCAGAACATGGGCGTTGGCAAGAACGGAGACCTACCC 6696158 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| || || | ||||| || || |||| || | |||||| | | | || | Sbjct 6696157 TGGCCCCCACTCAGGAATGAGTTCAAGTATTTCCAGAGAATGACCATTACCACAACCTCC 6696098 Query 2260 TTA---------AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCC 2310 | | ||||||||| | || |||||||| || ||||| ||||| || | |||| Sbjct 6696097 TCAGTAGAAGGGAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTC-CATCCC 6696039 Query 2311 ATTAAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAG 2368 | | ||| | | ||||| || |||| || ||| | || ||||||||| | || |||| Sbjct 6696038 -TGAGAAGAATAGACCTTTAAAAGACAGGATTAATATAGTCCTCAGTAGAGAACTCAAAG 6695980 Query 2369 AGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAA 2428 | || |||| || ||||| ||| |||| |||||| | ||| | || || ||| | || Sbjct 6695979 AACCCCCACAAGGAGCTCATTTTCTTGCTAAAAGTCTGGATGAGGC-CTTAAAACT-TAC 6695922 Query 2429 TAGG--ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGT 2486 | | ||||||||||| | | | ||| | | | |||||||| | || || || || || Sbjct 6695921 TGCGCAACCAGAATTAAGAAATAAAGTGTACATGGTTTGGATAGTAGGAGGCAGTTCAGT 6695862 Query 2487 CTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCA 2546 || |||| ||| | | | || | | | |||||| | |||||||| |||| Sbjct 6695861 TTACCAGGAAGCCATAAATCAACCAGGCCATCTTAGACTGTTTGTGACAAGGATAATGCA 6695802 Query 2547 AAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTAC-CAAATACAAACAACTTA 2605 |||||||| |||| |||| || || |||||| | ||||| |||||||||| ||| Sbjct 6695801 GGAATTTGAAAGTGACACATTTTTTCCTGAAATTGA-CTTACAGAAATACAAACTTCTTT 6695743 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665 | || | ||||||||| | |||| | || |||||||| || |||| || ||||||| Sbjct 6695742 CAGAGTACCCAGGTGTTGCTTCTGATATTCAGGAAGAAAAAGGCATTAAGTATAAATTTG 6695683 Query 2666 AGATATATGaaaaaaa 2681 | |||||||||| || Sbjct 6695682 AAGTATATGAAAAGAA 6695667 >seq353 Length=2119611 Score = 194 bits (214), Expect = 1e-44 Identities = 380/556 (68%), Gaps = 17/556 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||| || || | ||||| || | || ||||||||||| || || ||| | || || Sbjct 1120953 CTAAATTGCATCGTTGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGAGACCTACCC 1121012 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---------ATCTTCT 2250 ||||| || || | ||||| || || |||| || | |||||| | | || Sbjct 1121013 TGGCCCCCGCTCAGGAATGAGTTCAACTATTTCCAGAGAATGACCATGACCACAACCTCC 1121072 Query 2251 TCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCC 2310 || || ||||||||| | || |||||||| || ||||| ||||| || | |||| Sbjct 1121073 TCAGTAGAAGGGAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTC-CATCCC 1121131 Query 2311 ATTAAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAG 2368 | | ||| | | |||||||| | || || ||| | || | ||||||| | || |||| Sbjct 1121132 -TGAGAAGAATAGACCTTTGAAAGATAGGATTAATATAGTCCGCAGTAGAGAACTCAAAG 1121190 Query 2369 AGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAA 2428 | || |||| || ||||| ||| |||| |||||| | ||| | || | || |||| Sbjct 1121191 AACCCCCACAAGGAGCTCATTTTCTTGCTAAAAGTCTGGATGAGGCCTTAAAACTTATTG 1121250 Query 2429 TAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCT 2488 ||||||||||| | | | ||||| | | |||||||| | || || || | || | Sbjct 1121251 AGCAACCAGAATTAAGAAATAAAGTGGACATGGTTTGGATAGTAGGAGGCAGTTTGGTTT 1121310 Query 2489 ATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAA 2548 | |||| ||| | | | || | | |||||| | |||||||| |||| Sbjct 1121311 ACCAGGAAGCCATGAATCAACCAGGCCATCTTGGACTGTTTGTGACAAGGATAATGCAGG 1121370 Query 2549 AATTTGAATGTGATACA--TACTTCCCAGAAATTAATCTTAC-CAAATACAAACAACTTA 2605 |||||||| |||| ||| | ||||| |||||| | ||||| |||||||||| ||| Sbjct 1121371 AATTTGAAAGTGACACATTTTTTTCCCTGAAATTGA-CTTACAGAAATACAAACTTCTTC 1121429 Query 2606 CTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTG 2665 | | | ||||||||| | |||| | || |||||||| || |||| || ||||||| Sbjct 1121430 CAAAGTACCCAGGTGTTGCTTCTGATATTCAGGAAGAAAAAGGCATTAAGTATAAATTTG 1121489 Query 2666 AGATATATGaaaaaaa 2681 | |||||||||| || Sbjct 1121490 AAGTATATGAAAAGAA 1121505 >seq118 Length=10455207 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||||||||||| || ||||||||| Sbjct 3625592 GTGGTCGAAGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATTGTGGCCTTCTTTGAG 3625533 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| || ||||| | | || | |||| || ||| || Sbjct 3625532 TTCGGTGGGGTCATGTGCGTGGAGAGTGTCAACCGGGAGATGTCGCCCCTGGTGGACTAC 3625473 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 3625472 ATCGCCCTCTGGATGACCGA 3625453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414432509009152