Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq316 149 5e-31 seq353 127 2e-24 seq21 123 2e-23 seq82 105 5e-18 seq116 87.8 1e-12 >seq316 Length=2809289 Score = 149 bits (164), Expect = 5e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || || Sbjct 1685910 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGG 1685969 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 |||||| || |||||||| |||||||||||||| ||||| || ||||| || || | Sbjct 1685970 CACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCAC 1686029 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 |||||| ||||| || | ||||||||| || || |||||||| Sbjct 1686030 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || ||||| || || ||||| ||||| || || | | || Sbjct 1689926 AAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGATCTCCTTCATCTCGGGTGGAAAAT 1689985 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||| | ||| || ||||| |||||||||||||| || || Sbjct 1689986 CCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCATCCCAGATCTTTACGCCTTTGGAA 1690045 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | || ||||| || Sbjct 1690046 GACAGCTCCTTAGCATTGGTGGAGCC 1690071 >seq353 Length=2119611 Score = 127 bits (140), Expect = 2e-24 Identities = 178/246 (72%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| ||||| ||||| || || || ||| |||||| || | ||| ||| | Sbjct 1121210 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGCGGACTATATTAATCCTATCTTT 1121151 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 || |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 1121150 CAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 1121091 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 114435 ||| || ||| | || || || | ||||| || ||| | || | || || || Sbjct 1121090 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTCATGGTCATTCTCTGGAAATAGTTGAACTC 1121031 Query 114436 TTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT- 114493 || || | ||| |||| || || |||||||| || || ||||||||| ||| Sbjct 1121030 ATT------CCTGAGCGGGGGCCAGGGTAGGTCTCCGTTCTTGCCAATGCCCATGTTCTG 1120977 Query 114494 GGACAC 114499 |||||| Sbjct 1120976 GGACAC 1120971 >seq21 Length=27434213 Score = 123 bits (136), Expect = 2e-23 Identities = 177/246 (72%), Gaps = 14/246 (6%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| ||||| ||||| || || || |||||||||| || | ||||||| | Sbjct 6695960 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGAGGACTATATTAATCCTGTCTTT 6696019 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 6696020 TAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 6696079 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 114435 ||| || ||| | || || || | ||| | || ||| | || | || || || Sbjct 6696080 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTAATGGTCATTCTCTGGAAATACTTGAACTC 6696139 Query 114436 TTTGCAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT- 114493 || | ||| || |||| || || |||||||| || || | ||||||| ||| Sbjct 6696140 ATTCCTGAGT------GGGGGCCAGGGTAGGTCTCCGTTCTTGCCAACGCCCATGTTCTG 6696193 Query 114494 GGACAC 114499 |||||| Sbjct 6696194 GGACAC 6696199 >seq82 Length=15125257 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || |||||||||| || | ||| ||| ||| |||||||||||| || ||| Sbjct 6722612 TTGAGTTCTCTACTGAGGACTATATTAATCCTATCTTTCAAAGGTCTATTCTTCTCAGGG 6722671 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 6722672 ATGGAGAACCAGGTCTTCCTACCCATGATCACCAAATTCTGTTTCCCT 6722719 >seq116 Length=11478430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 114275 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAG-CCTGTCTCTCAGAGGTCTATT 114333 ||| | ||||| || || || |||||||||| ||| ||||||| ||| || |||||| Sbjct 10967676 GGGAGTTCTTTGAGTTCTCTACTGAGGACTAGTATTAATCCTGTCTTTCAAAGATCTATT 10967617 Query 114334 CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT-ACCTC 114392 ||| || ||||||||||||| || ||| || |||| ||||||| ||||| || || || Sbjct 10967616 CTTCTCAGGGATGGAGAACC-AGGCTTCCTCCCCAAAATCACCAAATTCTGTTTCACTTC 10967558 Query 114393 TGTCGGAAGACGTAGCGGTCAAGG 114416 | | || || || | ||||| || Sbjct 10967557 T-ACTGAGGAGGTTGTGGTCATGG 10967535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406119797400448