Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq94 174 1e-38 seq2236 118 9e-22 seq286 109 5e-19 seq8 102 7e-17 seq11 100 2e-16 seq223 98.7 8e-16 seq226 91.5 1e-13 seq28 91.5 1e-13 seq20 87.8 2e-12 seq202 86.0 5e-12 seq9 84.2 2e-11 seq146 82.4 7e-11 >seq94 Length=13213440 Score = 174 bits (192), Expect = 1e-38 Identities = 390/583 (67%), Gaps = 11/583 (2%) Strand=Plus/Plus Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| ||||| || || ||||| ||||||||| | ||||| | ||||| || | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||| | ||| || || ||||| ||||| | ||||| || | || |||| | Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGATT--- 4997947 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || ||||| ||||| | | ||| | | | |||||| | | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA-- 4788 || || ||||||| ||| ||||| || || || ||||| | || || || | Sbjct 4998008 CAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTGATG 4998067 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | || || | || | || |||| ||| ||||| || || || |||||||||| Sbjct 4998068 AGAAATTCCCATTCCTTA--GGATCTTTAAT----GTGTCAATAAGGAGACTATACATTT 4998121 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||||||||| ||||| || ||||| || || || || || || | |||||||| | | Sbjct 4998122 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCT 4998181 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | ||||| | | ||| | || || | |||||| || ||| | || ||||| || |||| Sbjct 4998182 GGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAGCAA 4998241 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 | || |||| |||||| ||||||||||| || |||| |||||| || |||||| Sbjct 4998242 AGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGACTTAAGGGCTTCCCAGTGCT 4998301 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | ||||| | | ||||| || | | ||||| || || | ||||| || Sbjct 4998302 AAATGTCTTTGGAAAGATCAATCTCCTTGGTGTTTCAAAAGGAAGCCTGAGCTTTCTTAG 4998361 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||| |||||| ||| | || | || |||| | |||||| Sbjct 4998362 ACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAAA 4998404 >seq2236 Length=6892 Score = 118 bits (130), Expect = 9e-22 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | |||| ||||| || | | || |||| Sbjct 2606 AGCCCTTGTGAAAACAGACATTCAGATAGCCCTTCCTTAGGGGTGTTATGAAAGAGTAGC 2665 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | ||||| || || || || || || ||||| |||||| Sbjct 2666 TCCACGTTCTGGCTTGGCTGAAAAACATTTCATAGATGTAGGAGCTGGTGTGATAGATGA 2725 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || |||||||| ||||| |||| ||||||||||||| |||||||| | || Sbjct 2726 AGATTACAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAAT-TTGGAG 2784 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||||| ||| || | || || || ||||| ||| Sbjct 2785 --TAAAAAAGGTTGATCGGATTGCACAGCTTATTTGTGAA 2822 >seq286 Length=3233792 Score = 109 bits (120), Expect = 5e-19 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || ||| Sbjct 1398427 AGCCCTTGTGAAAACAGACATTCAGATCGCCCTTCCTTCTGGGTGTTAAGGAAGAGCAGC 1398486 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | ||||| || || || || || || ||||| |||||| Sbjct 1398487 TCCACGTTCTGGCTTGGCTGCAAAACATTTCATAGATGTAGGAGCTGGTGTGATAGATGA 1398546 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || |||||||| || | | || ||||||||||||| ||||||||| | || Sbjct 1398547 AGATTACAGAGGAAATGTCAGTGTCGTACTGTTTAATTTTGGCAAAGAAAAATC-TGAAG 1398605 Query 31942 TATAAAAAAGG 31952 || |||||||| Sbjct 1398606 TAAAAAAAAGG 1398616 >seq8 Length=38200284 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| || || | ||||| || Sbjct 15304832 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGAT 15304891 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || || || ||||| | |||||||| || ||||| || | ||| ||||| Sbjct 15304892 AAAATACTTCTCATCTGGTTTAAGCCTGTTCCAGTGAGGGAAATCATTTGATAAGTCAAC 15304951 Query 5051 TTCTTCAAC 5059 ||||| || Sbjct 15304952 CTCTTCCAC 15304960 >seq11 Length=32252908 Score = 100 bits (110), Expect = 2e-16 Identities = 305/473 (64%), Gaps = 44/473 (9%) Strand=Plus/Plus Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 ||||| |||||| || | || || ||||||| ||| | || | |||| || || Sbjct 31685017 ATTATTTCTTTTTCTTGCTTTTCTGAGGGTTTATGTACCAGGTGTTTGAACACTAGGCAA 31685076 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| ||||| || | ||| || |||| || || ||||| || ||||| || || Sbjct 31685077 GCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCATTGGAAAATGTGGGGCCA 31685136 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||| ||| |||| || || ||||| ||||| | |||| || ||||| |||| || Sbjct 31685137 GGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACAAA-GAAGCAGAACAGAAGATT 31685195 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || || || ||||| | || ||| || Sbjct 31685196 CCTTCCACTGCTGCCAAGGCTACAACACG------------------------TTT--TC 31685229 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 ||| ||| ||||| || ||| || || || || | | || || || || Sbjct 31685230 CAT---------CAGC-AGCTTCTT-CTTTACACAGGGCATCATTTCAATGGCATTGAAG 31685278 Query 4791 A---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 | ||| | || | | || |||| ||| |||||||| || || || ||||||||| Sbjct 31685279 AGAAATTCCCATTCCTTA---GGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATT 31685335 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 ||||||||||| ||||| | ||||| || || || | || || ||||||||| | Sbjct 31685336 TCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGTGAGCTTCTGTAATC 31685395 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 ||||| | | ||| | |||| | ||||||||| ||||| || ||||| Sbjct 31685396 CAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATGCCATCACT 31685448 >seq223 Length=5023716 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||||||||| || || || || |||||||||||||||||||| ||||| || Sbjct 3962642 GGATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 3962583 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || || | ||||||||| || || ||||| Sbjct 3962582 GCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTC 3962536 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 4692 AC 4693 || Sbjct 3965704 AC 3965703 >seq226 Length=4538452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| |||||||| || | | ||||||||||| | ||| || |||| Sbjct 3150717 AGCCCTTGTGAAAATAGATATTCAGATAGCCCTTCCTTCAGGGTGTTGTGGAAGAGTAGC 3150776 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||| | | |||| || || || || || ||||| |||||| Sbjct 3150777 TCCACGTTCCGGCTTGTCTGCACAACATTTCATAGATAGAGGAGCTGGTGTGATAGATGA 3150836 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || |||||||||||||| | | ||||| ||||||| |||||||| | || Sbjct 3150837 AGATTACAGAGGAAACGTTGGTGTCATACTGTTTCATTTTGGCAAAGAAAAAT-TTGAAG 3150895 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||| |||| ||| || | || || || ||||| ||| Sbjct 3150896 --AAAAAGAGGGTGATTGGATTGCACAGCTTATTTGTGAA 3150933 >seq28 Length=22341012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || ||||| || ||||| || | | ||||| ||| | || ||| || ||||||| Sbjct 17268865 CTTGTGAAAACAGACATTCAGATAGCCCTTCCTTCGGGGAGTTATGGAAGAGTAGCTCCA 17268806 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | ||||| ||||| | ||||| || || || || | | ||||| |||||| ||| Sbjct 17268805 CGTTCTGGCTTGGCTGCAAAACATTTCATAGATGTAGTAACTGGTGTGATAGATGAAGAT 17268746 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAAT 31934 || ||||||||| |||| | | ||||||||||||| |||||||| Sbjct 17268745 TACAGAGGAAACATTGGTGTCATACTGTTTAATTTTGGCAAAGAAAAAT 17268697 >seq20 Length=28179453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | |||| || || || | | || |||| Sbjct 27297160 AGCCCTTGTGAAAACAGACATTCAGATAGCCCTTCCTTTTGGATGTTATGAA-GAGTAGC 27297218 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | ||||| || || || || || | ||||| |||||| Sbjct 27297219 TCCACGTTCTGGCTTGGCTGCAAAACATTTCATAGATGTAGGAGTTGGTGTGATAGATGA 27297278 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || ||| ||| ||||| | | ||||||||||||| ||||||| | || Sbjct 27297279 AGATTACGGAGAAAATGTTGGTGTCCTACTGTTTAATTTTGGCAAAGAAAAAAATTGAAG 27297338 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||| ||| ||| || | || || || ||||| ||| Sbjct 27297339 --TAAAAATGGGTGATCGGATTGCACAGCTTATTTGTGAA 27297376 >seq202 Length=5697000 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| || || | ||||| || Sbjct 3880353 TACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGAT 3880294 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || || || ||||| |||||||| || | ||| || | ||| ||||| Sbjct 3880293 AAAATACTTCTCATCTGGTTTAAGCCGGTTCCAGTGAGGGAGATCCTTTGATAAGTCAAC 3880234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| ||||| || ||||| ||||| |||||||| ||||| |||||| Sbjct 3906049 TGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 3905990 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 3905989 ATAAAATCAAAGGGATT 3905973 >seq9 Length=36036951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| | | | |||| ||| || ||| || |||| Sbjct 25682150 AGCTCTTGTGAAAACAGACATTCAGACAGCCCTTCCTTTGTGGTATTATGGAAGAGTAGC 25682091 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | ||||| || || || || | || ||| | |||||| Sbjct 25682090 TCCACGTTCTGGCTTGGCTGAAAAACATTTCATAGATGTAGAAGCTGGTATGATAGATGA 25682031 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA- 31943 ||| || |||||||||||||| | | |||||||| || || ||| | || | | Sbjct 25682030 AGATTACAGAGGAAACGTTGGTGTCATACTGTTTAATCTT-GACAAAGAACACTTTGAAG 25681972 Query 31944 TAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||||| ||| || | || || || | ||| ||| Sbjct 25681971 TAAAAAAGGGTGATCGGATTGCACAGCTTAATTGTGAA 25681934 >seq146 Length=8840894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/220 (70%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| | ||||| || | | ||||| ||||| || ||| || |||| Sbjct 6321804 AGCCCTTGTGAAAAAC---ATTCAGATAGCCCTTCCTTCGGGGTGTTAAGGAAGAGTAGC 6321860 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | ||||| || || || || || | ||||| |||||| Sbjct 6321861 TCCATATTCTGGCTTGGCTGCAAAACATTTCATAGATGTAGGA-CTGGTGTGATAGATGA 6321919 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || |||| |||| ||| ||||||||||||| |||||||| | || Sbjct 6321920 AGATTACAGAG------TTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAAT-TTGAAG 6321972 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||||||||| || | | || || ||||| ||| Sbjct 6321973 --TAAAAAAGGGCGATTGGATTACACAGCTCATTTGTGAA 6322010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427003965479744