Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq316 134 1e-26 >seq316 Length=2809289 Score = 134 bits (148), Expect = 1e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || || Sbjct 1685910 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGG 1685969 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 ||||| || |||||||| || ||||||||||| |||||||| ||||| || |||| Sbjct 1685970 CACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCAC 1686029 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| ||||| || | ||| ||||| || || || ||||| Sbjct 1686030 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 Score = 102 bits (112), Expect = 6e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| ||| | || |||||||| ||||||||||| || || ||||| || || ||||| | Sbjct 1689903 TCATATCCTTATATTCTGCTCCAAAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGAT 1689962 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| || || | | || ||| ||||||||||||| | ||| || ||||| | Sbjct 1689963 CTCCTTCATCTCGGGTGGAAAATCCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCAT 1690022 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||||||| || || || ||||| || | || ||||| || Sbjct 1690023 CCCAGATCTTTACGCCTTTGGAAGACAGCTCCTTAGCATTGGTGGAGCC 1690071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369467714460608