Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq94 232 1e-55 seq11 179 5e-40 seq44 120 4e-22 seq2236 116 5e-21 seq223 116 5e-21 seq202 111 2e-19 >seq94 Length=13213440 Score = 232 bits (256), Expect = 1e-55 Identities = 525/781 (67%), Gaps = 29/781 (4%) Strand=Plus/Plus Query 46435 tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATC 46494 || ||||| || | |||| | || ||||| ||||| || ||||| | | | | | | Sbjct 4997648 TTGTTAAAACCCAGTTCTAACATTAGTCTGTCTGCCACAAATTCAAAGTTCTATGCCGTT 4997707 Query 46495 ATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCA 46554 | |||| |||| || || || || || || ||||| | ||| ||||| || || Sbjct 4997708 AAGGTACAACTCATCCCAATAAGCTTCACAGGCGAGGCCTCAGGAAGTAACTCCTGCTCC 4997767 Query 46555 ATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAA 46614 || | ||||||| || | ||| ||| ||| | ||| || | | || Sbjct 4997768 ATCCTAACAGCAT-------TAACAATG--ACTTTTTTC---CTTT-TGTCTAC--CAGG 4997812 Query 46615 TGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCG 46674 ||||| |||| | ||||| ||||| || | |||||||||||| ||| | | ||| Sbjct 4997813 TGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCA 4997872 Query 46675 TTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAA 46734 | ||||||||||| ||||||| ||| | | || |||||||| ||||| | || ||| Sbjct 4997873 CTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAA 4997932 Query 46735 GATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG 46794 || | || |||| | ||||| || || || || || || | ||||||||||| | Sbjct 4997933 GAACTGGAGAAGATT---CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTA 4997989 Query 46795 GCATCATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATT 46851 || || | | ||| | ||||| || || ||||||||||| |||||| Sbjct 4997990 ATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATT 4998049 Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 ||||| || ||||| | |||||| | ||| | | |||||||| ||| || || Sbjct 4998050 GTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTAA----TGTGTCAATA 4998105 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | |||||||||||||| ||||| |||||||| || || || || || || || ||||| Sbjct 4998106 AGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 4998165 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | ||||| |||||||| || ||| | ||| || || || || ||||||||| | Sbjct 4998166 CGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTG 4998225 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 |||||||| |||||||| || |||| ||||| ||||| || | || || | | Sbjct 4998226 CCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGACTTA 4998285 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTA-CTTCTTCAGCTG-TCCAGAATG 47149 || | ||||| | || ||||| || | ||| | || ||| | || | || || | Sbjct 4998286 AGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTT--GGTGTTTCAAAAGG 4998343 Query 47150 ACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAA 47209 | |||| ||||| ||| |||| | ||| || ||| | |||| | ||||||| |||| Sbjct 4998344 AAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAA 4998403 Query 47210 A 47210 | Sbjct 4998404 A 4998404 >seq11 Length=32252908 Score = 179 bits (198), Expect = 5e-40 Identities = 478/729 (66%), Gaps = 55/729 (8%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||| | |||||||| | || || | ||||| ||||| | |||| ||| || | Sbjct 31684763 TGACCTTACTCCCATCCTCTGATACTTGCCTACGTTCTTCTCAGAGAAATCAGTCTTCCT 31684822 Query 46383 TTCCAATGATATATTTTCCAT-AAAATCAAACGGATTAGTAACATTATAAAtttttttAA 46441 |||| ||| ||||| | ||| ||||| ||| ||||| || || | | || |||| Sbjct 31684823 TTCCG-TGAAATATTCTTCATGAAAATAAAATGGATTTTATACTCTAAACACCTTGTTAA 31684881 Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA- 46500 | | | | | || ||||| ||||| || ||||| | || | || || | Sbjct 31684882 GCTCCAGTACCGGCATTAGTCTGTCTGCCACAAATTCAAGGTAA---TGCACCACTGAGG 31684938 Query 46501 --CAATTCATTCCTATGAGTTTGACCGGTA--GA--GCCTCCGTAAGAAACTCTTGTTCA 46554 |||||||| || | || || || || | || ||||| ||||| ||||| ||||| Sbjct 31684939 TGCAATTCATCCCAAAAAGCTTCACAGGCAAGGAAGGCCTCAGTAAGGAACTCCTGTTCT 31684998 Query 46555 ATAGTGACAGCATCCGATATTATCGATGTTACTG--TTTCCTCACTTGGTGGATGCATCA 46612 || | ||||| ||||| | || || ||| || | ||| ||| | || Sbjct 31684999 ATCTGAATAGCATTAACAATTATTTCTTTTTCTTGCTTTTCTGAG--GGTTTATGTACCA 31685056 Query 46613 AATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATT 46672 ||||| |||| || || ||||| ||||| || | || ||| ||||||| || | || Sbjct 31685057 GGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTT 31685116 Query 46673 CGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGA 46732 | || ||||||||| | |||||| ||||||| | || |||||||| ||||| | | | | Sbjct 31685117 CATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCAC-A 31685175 Query 46733 AAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC 46792 |||| ||||| |||| || ||||| || || || || || |||| Sbjct 31685176 AAGAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAA--------------- 31685220 Query 46793 TGGCATCATTATGAATCCACCTTTGAGCCCAATCAGC--CTTTTTCTTTACACAAGGCAT 46850 ||| ||| | |||||| ||| ||||||||||| ||||| Sbjct 31685221 -----------------CACGTTTT----CCATCAGCAGCTTCTTCTTTACACAGGGCAT 31685259 Query 46851 TGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTAT 46910 |||| || ||||| |||||||| | ||| | | |||||||| || || || || Sbjct 31685260 CATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAAT 31685319 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 | |||||||||||||| ||||| |||||||| | || || || || || | ||||| Sbjct 31685320 AAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACA 31685379 Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTAT 47030 ||||| |||||| || ||| | ||| ||||| | || || || |||||||| Sbjct 31685380 GTGAGCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTAT 31685439 Query 47031 TCCATCACT 47039 |||||||| Sbjct 31685440 GCCATCACT 31685448 >seq44 Length=20396770 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||||||||| || || |||||| ||| | || || || || || || | Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| |||||||| |||||||| ||||| ||||| ||||| || | | ||| | Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 |||||| ||||||||| | || || ||| || || | ||||| |||| Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGGAA 12594333 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||| || ||||| |||| |||||||| || || |||||||| | ||| | ||| Sbjct 12601431 TGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAATAGAC 12601490 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || | || ||||||||||||||||| ||||| || || | | |||||| Sbjct 12601491 TCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 12601550 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 12601551 TTTCTTACACCAT 12601563 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| |||||||| ||||| || ||||| || || ||| Sbjct 12623880 GTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGAAGGTTG 12623939 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||| | Sbjct 12623940 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTCATCAGC 12623999 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 12624000 ATATGCTGTGGTCTTTC 12624016 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| ||||| || ||||| | || || || || || || || || || || Sbjct 12630182 CTGAACACTTTCTTTGTCTCTTTGTGCAAGTTAGAAACAGCAATCCTTGCTGCCAGGATG 12630241 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| |||| ||||| | || || ||| |||| || || ||||| |||| | Sbjct 12630242 GCATAGTCAGGGTGTTTAGTAGTCAAAGTCGCAGCTGTTTCAGCAGCCAAAGTGTCTAGT 12630301 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| ||||| || |||||| ||||| || |||||||||| Sbjct 12630302 TCCACAGTGGTAACCCCACTATATAAGCCTTGGATTACTTTCATGG 12630347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| |||||||||| || || | ||| ||||| ||||| || || || Sbjct 12613386 GAGCCTTCATAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTCACAACTGGCTTCCAAA 12613445 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || || | ||||| || || || || |||| ||| Sbjct 12613446 GCTCCATAATAAATGGTTTCAAATATTTGTTTATTCAGTAACTGGGCCTCTGGACTCTCA 12613505 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | || || || ||||||||||| || || || ||||| ||||| || Sbjct 12613506 AAAGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGGACCCCAATTCCAATGGGA 12613565 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 12613566 CGATGGCGTTTATTTGA 12613582 >seq2236 Length=6892 Score = 116 bits (128), Expect = 5e-21 Identities = 213/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| |||||||||| || |||||| | || |||| | | || || || || || | ||| Sbjct 2855 TTGAACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATC 2796 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 | | | |||| | ||| | ||||| ||| ||| | || | || |||| || || Sbjct 2795 AACCTTTTTTACTCCAAATTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2736 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAGAGAAAGACC 44587 || |||||||||||||| || ||| |||| ||||| || | |||| || | || Sbjct 2735 TCTGTAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTTTCAGCCAAGCC 2676 Query 44588 CGATCTAGGCGCTATTCTTCCATAACAGAATTTTGGCATAGACATACGAATATCTGTTTT 44647 || | || |||| |||| ||||||| | || | | || |||| |||||||| Sbjct 2675 AGAACGTGGAGCTACTCTTTCATAACACCCCTAAGGAAGGGCTATCTGAATGTCTGTTTT 2616 Query 44648 AATCAACCGTCTTTCTCCA--GGAGGGATAGTATAATCGTAAGCACTGTATAAATCATAT 44705 | ||| | ||||||||| || || | |||||||| ||||||||||| || || || Sbjct 2615 CA-CAA-GGGCTTTCTCCATGGGTGGAACGGTATAATCATAAGCACTGTACAAGTCGTAG 2558 Query 44706 CCTGCCGC 44713 ||||| || Sbjct 2557 CCTGCGGC 2550 >seq223 Length=5023716 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| ||||||||||| || ||||| || || || || || Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 46774 ACAA 46777 |||| Sbjct 3965704 ACAA 3965701 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 46339 |||| ||||| |||| || | ||| ||| ||| | | ||||| |||||||| | Sbjct 3966818 TTTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTGTTGGACTCGACATCACTCCCATCT 3966759 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || ||||| || ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 3966758 TCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 3966699 Query 46400 CCATAAAATCAAACGGATT 46418 ||||||||||||||||||| Sbjct 3966698 CCATAAAATCAAACGGATT 3966680 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| ||| ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || || || ||||| | ||||| |||| ||| || ||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTCT 3962535 >seq202 Length=5697000 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| || || || || ||||||||||| ||||| || |||||||||||||| || | Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 46772 CGAC 46775 | || Sbjct 3890629 CTAC 3890626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712856262389760