Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq94 132 5e-26 seq202 98.7 1e-15 seq223 91.5 2e-13 seq116 87.8 2e-12 seq135 82.4 8e-11 seq8 82.4 8e-11 >seq94 Length=13213440 Score = 132 bits (146), Expect = 5e-26 Identities = 310/462 (67%), Gaps = 17/462 (4%) Strand=Plus/Plus Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 ||||| ||||| |||| ||||||||| || ||| | | |||| | |||||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631 |||| | | ||| ||| || | ||| ||||||| ||||| || | ||| |||| | Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT---TGCATTATAATCAGA- 23687 || || || || |||||||| || | || || | || | | || | ||| Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 23688 -AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 || || ||| | |||||| |||||||| ||||||||||| || | Sbjct 4998008 CAACGCAAGGCCCAGTCTGCT--GCCTTC---TTTACACAGGGCATTGTTTCAATGGCAT 4998062 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | | |||||| ||| | | |||| ||| |||| ||||| || | |||||||| Sbjct 4998063 TGATGAGAAATTCCCATTCCTTAGGATCT-TTA---ATGTGTCAATAAGGAGACTATACA 4998118 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 |||||||||| || ||||| || ||||| || || ||||| ||||| | ||||| | | Sbjct 4998119 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 4998178 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 || || || | ||| | | | | ||||| || || | |||||||| |||| Sbjct 4998179 TCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAG 4998238 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG 23968 ||||||| || ||||||| |||||| | || || |||| Sbjct 4998239 CAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAG 4998280 >seq202 Length=5697000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | |||||| ||||| || | ||| ||||| | |||| || | Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| || || |||||||| ||||| || |||||||| || || ||||||||||||| Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 23651 CCAC 23654 | || Sbjct 3890629 CTAC 3890626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 23221 TGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCC 23280 ||||| ||| ||| ||| |||| ||||||||||| || || |||||||| || |||||| Sbjct 3906049 TGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 3905990 Query 23281 ATAAAATCAAATGGATT 23297 ||||||||||| ||||| Sbjct 3905989 ATAAAATCAAAGGGATT 3905973 >seq223 Length=5023716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | ||||| |||||||| || | |||||||||||||||||| || ||||| || || Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| || || ||||| ||||| | |||||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTC 3962551 >seq116 Length=11478430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| || |||||| || |||| |||||||||||| |||||||||||| ||||||| | Sbjct 3631748 CTCCTGGACTCAAGCAATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCA 3631807 Query 8465 AGCCACCACGCCAAGCTA 8482 |||||||||||| |||| Sbjct 3631808 AGCCACCACGCCTGGCTA 3631825 >seq135 Length=9491747 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| || |||||| || | || ||||||||||||||||||||||||| ||||||| Sbjct 4983230 CTCCTGGACTCAAGCGATCCCCCAGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGCGCG 4983289 Query 8465 AGCCACCACGCCAAGCTAATTTTTG 8489 ||||||||||| |||| | |||| Sbjct 4983290 CGCCACCACGCCCAGCTGACCTTTG 4983314 >seq8 Length=38200284 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| || |||||| || |||| |||||||||||| |||||||||||| ||| ||| | Sbjct 32933517 CTCCTGGACTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGACTACGGGCGCA 32933576 Query 8465 AGCCACCACGCCAAGCTA 8482 |||||||||||| |||| Sbjct 32933577 AGCCACCACGCCCGGCTA 32933594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521430844915200