Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq40 250 4e-61 seq184 228 1e-54 seq92 95.1 2e-14 seq433 91.5 2e-13 >seq40 Length=21071559 Score = 250 bits (276), Expect = 4e-61 Identities = 429/619 (69%), Gaps = 4/619 (1%) Strand=Plus/Minus Query 8952 GCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATG--CCGTGAGTCATGAGT 9009 ||| || || || || ||||| | ||| || | ||||| | || || || ||| Sbjct 16839816 GCCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTCACTATCCATGCTCCAGCAGT 16839757 Query 9010 ATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCAAATGCA 9069 | || ||||||||||| || | |||||| |||| | |||| ||||| ||| | Sbjct 16839756 ACAGAGTTGTTGTAGACAAACTGTTGGTAGTCGTACTCTTGGTTATTAATCTGAAAGGTG 16839697 Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129 || |||| ||||| |||||||| || | ||||||||||| | || | |||||| Sbjct 16839696 TCAGGCAGGAGAGGGTGCCAGTGGTAGAGAGAGTTAAACTCGGCAGCAATGCAGTTTTGG 16839637 Query 9130 TACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCG 9189 | |||||| | || ||||| || || | |||| ||| | |||||| ||||| Sbjct 16839636 TCCTGGAAATCTTGATTGAAAAGCAGCTCTGGGTCAAACTTCAGTTTAAAATGATAGCCA 16839577 Query 9190 CTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGATAATGATGAG 9248 ||||| ||||| || || | | || | | ||| || || | || || || | || || Sbjct 16839576 CTGAGGTGCTGCACATAGT-CTTCGATCACAATATTAATAATCTCTCCTATGAGAATTAG 16839518 Query 9249 TCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATC 9308 | | ||||||||||| ||||| ||| | || | || || || | ||| || ||||| Sbjct 16839517 CCTGCTTGTCTGGAACAGCTGCTCATCATCCTATCCGGGGTGCTCCTCTTTAAGCACATC 16839458 Query 9309 GCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAG 9368 ||||| | ||| ||||| || ||||| | ||||| |||||||| || || || ||||| Sbjct 16839457 ACACACTCGGTTATGTTCGCTAAGCCAATTGGTGGCATACATCATTAGACCCGGCACCAG 16839398 Query 9369 GCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGAT 9428 ||||| ||| ||| || || || | || | || || || || | ||||| || || Sbjct 16839397 ACCAAAGACCTGTTGCCCCACCGCAAAGCGAACGTGCTCTGGTACGTTTGGAGGGTACAT 16839338 Query 9429 CATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGATA 9488 ||||| ||||| || ||||| | ||| |||||||| || || |||| ||||||||| Sbjct 16839337 CATGTCTACCTGAGTCTCCTTGACTGTGGGAGGATACATCTCTCCATCAACCATCTGATA 16839278 Query 9489 CTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCGTCTCTCCATA 9548 |||| |||||| || ||||| || |||| ||| |||| | || | || || ||||| Sbjct 16839277 TTTCAGTTTTCCATCCTTGAAAAGGTGCAGTTTATGCTGTCTGTCCAGAGTTTCACCATA 16839218 Query 9549 GATGTGGTTGAGATCCACC 9567 || || | | ||||||| Sbjct 16839217 AATATGACTTAAATCCACC 16839199 Score = 118 bits (130), Expect = 2e-21 Identities = 198/285 (69%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 || || || || || || | |||| ||||||||||| | || | |||||||| Sbjct 16840248 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 16840189 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| ||||| || || ||||| |||||||| || || || || || || Sbjct 16840188 AAACCCACTTCTCCACCAAACGTGCTAGGCTTCCAATAGGTAGGAGAACATATAGTATTA 16840129 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACT-CGAGAATGCTCTCACCGAAGAT 8481 |||| || ||||| | ||| || || || || | | | | ||| ||||||| ||||| Sbjct 16840128 CCCATCAGTCCTTTCAAGGAAAATGGTGCGGCCTAGTTCTACCATGGTCTCACCAAAGAT 16840069 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || | ||||| |||||||| |||| | |||| |||||||||| ||| || | ||| Sbjct 16840068 GGAATCTGGACGAGGCTTTTCTACCAGCAGGCCGGGATACAGCTCCATAGCTTCAATGTC 16840009 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || || || | || ||||| || ||||||||||| || Sbjct 16840008 ACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTTTCTCCAGT 16839964 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9653 ACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAAC 9712 |||||||| ||||||||||| || || || || |||| | ||||| ||| | ||| || Sbjct 16839201 ACCCCATGGCCCAGTCCTTTGGTAAAAGCTGGCCCTCACTTAAAATCTGTCTTGAAATAC 16839142 Query 9713 TGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGA 9772 || || || || |||||| |||| || | |||||| | || |||||||| ||||| | Sbjct 16839141 TGATGAGTAAAGTGTTGGGCAAAGAACGTAAACATCATATTTGTGCCCTGAGGATCAAGG 16839082 Query 9773 GTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 |||| | || | | |||| |||||||||||| Sbjct 16839081 ATGAACTTTCTTCTCAAAAGAACTTTTTCCACAAC 16839047 >seq184 Length=6332433 Score = 228 bits (252), Expect = 1e-54 Identities = 417/615 (68%), Gaps = 17/615 (3%) Strand=Plus/Plus Query 8953 CCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTCATGAGTATG 9012 || || || || || ||||| | ||| || | ||||| | || || || |||| Sbjct 2433436 CCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTCACTCCATGCTCCAGCAGTACA 2433495 Query 9013 GAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCAAATGCATCC 9072 || ||||||||||| || | ||||| |||| | |||| ||||| ||| | || Sbjct 2433496 GAGTTGTTGTAGACAAACTGTTGGTAGTTGTACTCTTGGTTATTAATCTGAAAGGTGTCA 2433555 Query 9073 GGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTAC 9132 |||| ||||| |||||||| || | |||||||||||| | || | ||||||||| Sbjct 2433556 GGCAGGAGAGGGTGCCAGTGGTAGAGAGTGTTAAACTCGGCAGTGATGCAGTTTTGGTAC 2433615 Query 9133 TGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTG 9192 |||||| | || ||||| || || | |||| ||| | |||||| ||||| ||| Sbjct 2433616 TGGAACTCTTGATTGAAAAGCAGCTCTGGGTCAAACTTCAGTTTAAAATGATAGCCACTG 2433675 Query 9193 AGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCCGATAATGATGAGTCGA 9252 || ||||| || || | | | | ||| || || || || | || | || || | Sbjct 2433676 AGGTGCTGCACATAGTCTTTGATCACAATCTTAATAGTCTCTTCTATGAGAATTAGCCTG 2433735 Query 9253 GTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCAC 9312 | ||||||||||||| ||| || ||||| |||||||| | ||| || ||||| | | Sbjct 2433736 CTTGTCTGGAACAGTTTCTCATCGTCCCATTTGGGATGTTCCTCTTTAAGCACATCACGC 2433795 Query 9313 ACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCA 9372 || | ||| |||| | ||||| || | ||| |||||||| || || || |||| ||| Sbjct 2433796 ACTCGGTTAAGTTCACAAAGCCAAATGGCGGCATACATCATTAGACCTGGCGCCAGACCA 2433855 Query 9373 AAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATG 9432 || ||||||| || ||||| | || | ||| ||||||||| Sbjct 2433856 AAGACCTCTTGCCCCACAGCAAAGCGAA-----------------ATAGGGTAGATCATG 2433898 Query 9433 TGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGATACTTC 9492 | |||| || ||||| | ||| | |||||| || || |||||||||||||| ||| Sbjct 2433899 TCTGCCTGAGTCTCCTTGACTGTGGGAGTATACATCTCTCCATCAATCATCTGATATTTC 2433958 Query 9493 ATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTTTCTGGCGTCTCTCCATAGATG 9552 | |||||| || ||||| || | ||| ||| |||| | | | || || ||||| || Sbjct 2433959 AGTTTTCCATCCTTGAAAAGGCACAGTTTATGCTGTCTGTGCAGAGTTTCACCATAAATA 2434018 Query 9553 TGGTTGAGATCCACC 9567 || || | ||||||| Sbjct 2434019 TGATTTAAATCCACC 2434033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/280 (67%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 || || || || || || | |||| ||||||||||| | || | |||||||| Sbjct 2433004 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 2433063 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| ||||| || || ||||| ||||||| || || || || | | || Sbjct 2433064 AAACCCACTTCTCCACCAAATGTGCTATGCTTCCAATAGGTAGGAGAACATGTAAGATTA 2433123 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || |||| | ||| || || || | || | ||| ||||||| ||| || Sbjct 2433124 CCCATCAGTTCTTTCAAGGAAAATGGCATTCCTAGTTCTACCATGGTCTCACCAAAGCTG 2433183 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | ||| | | |||||| |||| | || |||||||||| ||| || | ||| Sbjct 2433184 GAATCTGGAAGAGTCTTTTCTACCAGCAGGGTGGGATACAGCTCCATAGCTTCAATGTCA 2433243 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| || ||| | || ||||| || |||||||||| Sbjct 2433244 CCGTAGAGAGCCTCTAACTCTGCAGCCATTTCCTTTTCTC 2433283 >seq92 Length=13624840 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| |||| | | Sbjct 529078 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCGGGACCCATCTTGCCAG--CAGTTTTGA 529135 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| || |||||||| |||||||||||||||| | ||||||||| || |||| Sbjct 529136 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGAGGAT 529195 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | ||| |||| |||||| Sbjct 529196 CAGGAATGAACTTCCTCC 529213 >seq433 Length=1104632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 9653 ACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAAC 9712 |||||||| ||||||||| | || || | || |||||| ||||| ||| | ||| || Sbjct 903727 ACCCCATGGCCCAGTCCTCTGGTAAAATCTGGCCCTCGCTTAAAATCTGTCTTGAAATAC 903786 Query 9713 TGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGA 9772 || || || | |||||| |||| || | |||||| | || | || ||| ||||| || Sbjct 903787 TGATGGGTAGAGTGTTGGGCAAAGAACGTAAACATCATATTTGCGCACTGAGGATCAGGG 903846 Query 9773 GTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 |||| | || | |||||| |||||||||||| Sbjct 903847 ATGAACTTTCTTCTCAGAAGAACTTTTTCCACAAC 903881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716798230302720