Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7 129 5e-25 seq28 118 8e-22 >seq7 Length=94539749 Score = 129 bits (142), Expect = 5e-25 Identities = 374/572 (65%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-C 18856 ||||| |||| ||||| ||||||| |||||||| || ||| ||||||| | | ||| | Sbjct 47937126 GGCCCAGTTTATGGCTTTTAGTGGAGGCATTTTGGGGCAGAACATAAAGA-TATGAATTC 47937068 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 | | |||| | |||||| | || |||||||||| ||||| || ||||| |||| || Sbjct 47937067 AGATTATTCAGGCCAAGGAGTAGACCAGCTGCAAAAAGTTATTGACACAATCAAAAGTAA 47937008 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| || | || |||| | | | ||||||| || || || | || | ||| Sbjct 47937007 CCCTGAGGACAGAAGAATCCTCACGTGTGCTTGGAACCCGAAAGACCTTCCTCAGAGGGT 47936948 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 | ||||| || || | | || ||||| || || | ||| || | | |||||||| Sbjct 47936947 GTTGCCTCCCTGCCATGCCGTCTGCCAGTTCTAGGTGGTGAACAGTAAGCTGTCCTGCCA 47936888 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTA---------CCGTTCAACATTGC 19087 | |||||||| || || || |||| || |||| | || |||||||| || Sbjct 47936887 GCTGTACCAGAGCTCAGGAGACATGGTCCCGGGGGGAAGAGGGGTGCCTTTCAACATGGC 47936828 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | || || || |||||||| | | || | | | || || | || || || Sbjct 47936827 CAGCTACCACCTGCTCACCTACATGATGGAACACATCATGAGCCTGAAGCCAGGTGACTT 47936768 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207 | ||||| ||| ||| ||||||||||| ||||||| | || | | ||||| || Sbjct 47936767 TGTACATACTTCGGGAGATACACATATTTACCTGAATCACACTGAGCCCCTGAAAGTTCA 47936708 Query 19208 GCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATG-TAACAGATA 19266 ||| | || |||| |||||| || || | | || |||| | | | | | | Sbjct 47936707 GCTTCCATGAGAACCAAGACCTTTCCCCAAGCTCGGCACTCTTGGAAAAGCTGAGACA-A 47936649 Query 19267 TAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAA 19326 | || || ||| || || |||||| |||| | |||||||| || || | | | Sbjct 47936648 TTGCTGATTTCAAAGCTGAAGACTTTCAGATTGAAAGGTATAATCCTCAGCCAACTATTA 47936589 Query 19327 AAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 |||||||||| ||| | || |||||||| Sbjct 47936588 AAATGGAAATAGCTGTCTAGACTGTTTTTAAA 47936557 >seq28 Length=34889373 Score = 118 bits (130), Expect = 8e-22 Identities = 362/549 (66%), Gaps = 13/549 (2%) Strand=Plus/Minus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA-CTGTCAATC 18856 ||||| |||| ||||| |||||||| |||||||| || ||||||||||| ||| | || Sbjct 14578663 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATATAAAGATCTG-AATTC 14578605 Query 18857 AAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAA 18916 | | ||| || |||||| | || |||||||||| | || || ||||| ||||| || Sbjct 14578604 AGATTATATAGGTCAAGGAGTAGACCAGCTGCAAAAGGCTACTGACACAATCAAAACCAA 14578545 Query 18917 CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGT 18976 ||| || | || |||| | || | |||||||| ||| | | || |||| Sbjct 14578544 CCCTGACGACAGAAGAATCTTCATGTGTGTTTGGAATCTAAAAGGCCTTCCTCAGATGGC 14578485 Query 18977 ACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCA 19036 ||| ||||| || || | | || ||||| | | | ||| || | |||||| | Sbjct 14578484 ACTGCCTCCCTGCCATGCTCTTTGCCAGTTCTGTGAGGTGAACATTGGGCTGTCCTGCTA 14578425 Query 19037 AGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGC 19096 | ||| || | || || || | |||| | | ||| || |||| ||| || | ||||| Sbjct 14578424 GCTGTACTAGGGTTCAGGAGACAGGGGCTTGGAGGTGCCTTTCACCATCGCCAGGTATGC 14578365 Query 19097 ACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATAC 19156 || |||| | | || || | || || || || | || || || | |||| Sbjct 14578364 CTGGCTCACCT--GTGATTGCACACATCACGGGCCTGAAGCCAGGTGACTTTGTATATAC 14578307 Query 19157 AATGGGGGATGCACATATTTACTTGAATCATATAGATGCT-TTAAAAGTGCAGCTAGCTC 19215 |||| ||||||| |||||| ||||||| | || ||| | ||||| |||| | Sbjct 14578306 TTTGGGAGATGCACTCATTTACCTGAATCACACTGA-GCTGCTGAAAGTTTAGCTCCAGC 14578248 Query 19216 GATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTC-GAA--ATGTAACAGATATAAACG 19272 || ||| |||||| || || |||||| ||| ||| || |||| | | Sbjct 14578247 GAGAACCAGGACCTTTCCCCAAGCTCAAAATTCTTCAGAAGGTTGAAACA---ACTGGTG 14578191 Query 19273 ACTTTAAATGGGACGA-TTTTCAGCTTGATGGATATAATCCACAccccccccTAAAAATG 19331 | || ||| || || ||||||| |||| || || ||||| || | | | ||||| Sbjct 14578190 ATTTCAAAGCTGAAGACTTTTCAGATTGAAGGGTACAATCCTCATCTGACTGTTCAAATG 14578131 Query 19332 GAAATGGCT 19340 ||||||||| Sbjct 14578130 GAAATGGCT 14578122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399492548217840