Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1 156 3e-33 seq7 150 1e-31 seq28 123 2e-23 seq8 113 3e-20 seq5 95.1 9e-15 >seq1 Length=129759341 Score = 156 bits (172), Expect = 3e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||| |||||||| |||||||| |||||||| ||||||||||| || || || || Sbjct 111447994 ATGGGGGTAACGCAGGTGCAGCCCACAGTCACCAGCATCTTCTCCAGTCTGAAGGAGCGG 111448053 Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074 || || | || || | | || || || |||||||| | || ||||| |||||| Sbjct 111448054 GGACATTGCCCATTTTCTCTTCTCAGGACCAGGATCTCTTGCTTGACGGGGACGGAGTTC 111448113 Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134 ||||||| || || | ||| ||||| || ||||| ||||||| | | ||||| || ||| Sbjct 111448114 ATGTGGTGGTTCACTTGCCCGTCAGCGTTGACACAGCCTAAGTGGAGGCACTTCGCCTCC 111448173 Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCGA 27173 |||||||||||||| ||||| || | || ||||||||| Sbjct 111448174 CAAATCACAGAGGGGTATCTCTCGGGGTCCTCATTGCGA 111448212 >seq7 Length=94539749 Score = 150 bits (166), Expect = 1e-31 Identities = 422/641 (66%), Gaps = 15/641 (2%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 || ||||| || | ||||||||| | || || || ||||| |||| ||| | || ||| Sbjct 47936570 TAGACAGCTATTTCCATTTTAATAGTTGGCTGAGGATTATACCTTTC-AATCTGAAAGTC 47936628 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || ||||| || ||| |||| | | |||| | | | || | || || || Sbjct 47936629 TTCAGCTTTGAAATCAGCAATTGTCTCAGCTTTTCCAAGAGTGCCGAGCTTGGGGAAAGG 47936688 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| || || | | ||| | ||| || | ||| |||||| | || || || | Sbjct 47936689 TCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGTAAATATGTGT 47936748 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| |||||| | ||| || || ||| || | ||| || | |||||| | Sbjct 47936749 ATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTTCCATCATGTA 47936808 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC---------ATATC 101823 || | || ||||| || ||||| || ||||| ||| ||| || || Sbjct 47936809 GGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCGGGACCATGTC 47936868 Query 101824 AGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTA 101882 |||| || || ||||| || ||||| ||||| | | ||| || || || || | | Sbjct 47936869 TCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACC-ACCTAGAACTGGCAGA 47936927 Query 101883 ATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTA 101942 |||| || || ||||||||| | | ||||| |||| |||||||||||| | | Sbjct 47936928 CGGCATGGCAGGGAGGCAACACCCTCTGAGGAAGGTCTTTCGGGTTCCAAGCACACGTGA 47936987 Query 101943 ACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAAT-TGGTCA 102001 || ||||| || |||||| |||| || || ||||| |||| ||| | ||||| Sbjct 47936988 GGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAAT-AACTTTTTGCAGCTGGTCT 47937046 Query 102002 ACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCAC 102061 ||||||| ||| |||||| | | |||||| |||||| || |||||||||||| Sbjct 47937047 ACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAAATGCCTCCAC 47937106 Query 102062 TGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCT 102121 | ||| ||||| || || || | ||||||||| ||||| | || || || | || Sbjct 47937107 TAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCCCAGGCTGTCC 47937166 Query 102122 AAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 ||||| || | ||||| ||||||| || | ||| || Sbjct 47937167 AAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCC 47937207 >seq28 Length=34889373 Score = 123 bits (136), Expect = 2e-23 Identities = 312/471 (66%), Gaps = 10/471 (2%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 ||| |||||| | || ||| | |||||||| | ||||| | ||| || || ||| Sbjct 14578271 TCAGTGTGATTCAGGTAAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTC 14578330 Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 || |||| || ||||||| || || | | ||| || || ||| | || ||| Sbjct 14578331 AGGCCCGTGATGTGTGCAATCA--CAGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGC 14578388 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA----TC 101862 || | || ||| | || |||| | | ||||| | ||||| ||| ||| || Sbjct 14578389 ACCTCCAAGCCCCTGTCTCCTGAACCCTAGTACAGCTAGCAGGACAGC---CCAATGTTC 14578445 Query 101863 ACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGA 101922 || || | || || | | |||| || || |||| |||| | ||||| | || Sbjct 14578446 ACCT-CACAGAACTGGCAAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTT 14578504 Query 101923 AACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAAT 101982 | ||||||| ||||||| || || ||||| || |||||| ||||| || || ||| | Sbjct 14578505 TAGATTCCAAACACACATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGT 14578564 Query 101983 CAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTC 102042 || || | ||||| ||||||| ||| ||||||| | | |||||||||| Sbjct 14578565 AGCCTTTTGCAGCTGGTCTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTC 14578624 Query 102043 TGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTC 102102 || || ||||||||||||||||| ||||| || || || |||||||| |||| | Sbjct 14578625 GGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGT 14578684 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 | | || || | || ||||| || |||||| | |||||||| || Sbjct 14578685 GGAGAGTCCCAGGCTGTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGAT 14578735 >seq8 Length=93792748 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||| | | |||||||| | ||||||||| |||| ||||| | ||||||||||| Sbjct 84117442 CTTGAGTCCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGG 84117501 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| ||||||||||||| |||||||||||| ||| Sbjct 84117502 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTG 84117551 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| ||||| | |||||| |||||||||||||||||| | ||||| Sbjct 84106948 TTGTAAACAGAACTGCCTCCTACTATCCAAACCATGTCTACTTTATTTCTCAGCTCTGGT 84107007 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 84107008 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 84107066 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4058 GTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGA 4117 |||| |||||||||| ||||| |||||||||||| ||||||| |||||| || ||||||| Sbjct 84103931 GTTTATATTTCTCTAAATCAATTTCTGGAAAAAACGTGTCACTTTCAAATTCCTGCATGA 84103990 Query 4118 TCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||| ||||| |||||| | || | || ||| | |||| ||||| || Sbjct 84103991 TCCTTGTCACGAACAGTCTCAGGTGGCCTGGCTGGTTCATGGCTTCCTT 84104039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||||| || || |||||||||||||||||||||||||| | ||||||||| || ||| Sbjct 84101092 TATTAATCTTTTTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCTTCCTGGACA 84101151 Query 4027 TTAGAAAGAACACTTGGATAT 4047 | ||||||||||| ||| ||| Sbjct 84101152 TCAGAAAGAACACCTGGGTAT 84101172 >seq5 Length=100893473 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||||||||| ||| || ||||||||||||||||| ||||| || || || | |||||||| Sbjct 90690684 CTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAATCTCCTT 90690743 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | || | | || | || || || | || ||||| || ||| ||||| |||||||| | Sbjct 90690744 CTTCCCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGA 90690803 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 90690804 TCTTCACTCC 90690813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361240844734352