Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq13 268 1e-66 seq1 120 4e-22 seq8 89.7 6e-13 >seq13 Length=65937429 Score = 268 bits (296), Expect = 1e-66 Identities = 262/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||| ||||||| ||| | | | | ||| || ||||| |||||||||||||| Sbjct 18051926 AGCAGGGCCTCAATGTCGGCCTCGATGTCGATGGTTGGGAAGCGGCGGCTGTACCTGCGC 18051867 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||| | ||||| | |||||||||||| ||||||| | |||||||||| Sbjct 18051866 ACAGGTACACCGTCGGGGCCCACTAGGAACTTCTCGAAATTCCAGGAGATGTCGTTGCGG 18051807 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || |||||| ||| ||| | | |||||||| Sbjct 18051806 CACACCGGAGACCAGATGATGAACTTCGGGTCGGTCATGAGTGCAGTGGCATCGTCGCTG 18051747 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || || ||||||||||| ||||| ||| |||||||| ||| Sbjct 18051746 GGCGCCGGCAGGGCCTCACGCAGAAAGGCGAAGAGGGGATGCGCCTGCGCACCGTTAACC 18051687 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||| ||| | ||||| |||||||| ||| || || || |||| ||| Sbjct 18051686 TCACACTTCTCGAATAGCGTGAAGTTGGGCTCGAACCCGCCGCCTGGTCGAACGTACTTG 18051627 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | || | | |||| ||||| Sbjct 18051626 AGGGAATTCAGGATCTCTTCCTTATTGCCGTTCTCCTG 18051589 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| ||||| ||||| || |||||||| || || || ||||| ||||| | || |||| Sbjct 18051309 CCTGATGACCAAACTGATTGCACGGGAAGCCGAGGACGACCAGGCCCCGGGGGCCAAGGC 18051250 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| ||||||||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 18051249 GCCGCTGCAGATCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 18051190 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | |||| | | |||| || || || |||| Sbjct 18051189 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGTTCACGGGCTCCCCGCCGG 18051130 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||||| || |||||||||| ||| || Sbjct 18051129 CCAGAGGGCGCGCAGAGAAGGCGTGCACGGA 18051099 >seq1 Length=129759341 Score = 120 bits (132), Expect = 4e-22 Identities = 192/269 (71%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 56554346 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 56554404 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 56554405 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 56554464 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 ||||||| |||||||| |||| || |||||| ||| | | |||| || ||| Sbjct 56554465 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 56554520 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 |||||||||||||| |||| ||| ||||| ||||| |||| ||||| || Sbjct 56554521 TATGTGCAGTTGCTCTACCCACGGGCCAAAAACGACCGCGTCTGGACTCTGGAGTTCGTG 56554580 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 | ||||| ||||||||||||||||| Sbjct 56554581 GGCAAGCTGGATGAGCGCTGCCGGCGCCG 56554609 >seq8 Length=93792748 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 83094 GGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGA 83153 || ||| |||||| |||||| |||| ||| | ||| ||||| | ||||||||||| Sbjct 74876821 GGAAGCAGTGGCTCTACCTGAGCACAGGCACACTGTCTTGGCCCACTAGGAACTTCTCGA 74876880 Query 83154 AGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGG 83205 ||||||||| |||| ||||| ||| || ||||||||| | |||||| ||| Sbjct 74876881 AGTTCCAGGAGACGTTGTTGCAGCATACCAGAGACCAGGTAGTGAGCTTGGG 74876932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608778901374080