Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq85 136 4e-27 seq93 134 1e-26 seq54 93.3 4e-14 seq27 87.8 2e-12 seq72 84.2 2e-11 >seq85 Length=6926877 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| | ||||| |||||||||||| | || || || ||| Sbjct 1865845 AATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTAGAGCCCAG 1865904 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || |||||||| | ||||| Sbjct 1865905 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1865964 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| |||| || ||||| |||||||| Sbjct 1865965 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866024 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | || |||| || || Sbjct 1866025 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866072 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||| ||| | || || || ||| Sbjct 1866757 AATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAG 1866816 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||| || | ||||| || |||||||| | ||||| Sbjct 1866817 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866876 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | || || || |||||||| Sbjct 1866877 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAA 1866936 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| |||||||| || ||||||||||||| || Sbjct 1866937 CATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 1866984 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 1866301 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAAGTAGAGCCCAG 1866360 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||| || | ||||| || |||||||| | ||||| Sbjct 1866361 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866420 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| |||| || ||||| |||||||| Sbjct 1866421 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866480 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | || |||| || || Sbjct 1866481 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866528 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || ||||| ||| | || || || ||| Sbjct 1866073 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 1866132 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||| || | ||||| |||||||| || | ||||| Sbjct 1866133 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 1866192 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | || || | |||||||| Sbjct 1866193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAA 1866252 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | || |||| || || Sbjct 1866253 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866300 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || || || || |||||| | || || || ||| Sbjct 1866529 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 1866588 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | |||||| ||| || | ||||| || |||||||| | ||||| Sbjct 1866589 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866648 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | || || || |||||||| Sbjct 1866649 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAA 1866708 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | || |||| || || Sbjct 1866709 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTGAGAGGGGG 1866756 >seq93 Length=5582385 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || ||||| || || || ||||| ||||||||| | || || || || Sbjct 4491285 AAAATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4491226 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || ||||| ||||| || | || Sbjct 4491225 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGA 4491167 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| |||| || || || ||||| Sbjct 4491166 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTGACTA 4491107 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || ||||| || || | ||| ||||||| || Sbjct 4491106 CAACATCCAGAAGGAATCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGG 4491056 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 4491054 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490995 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || ||||| ||||| || | ||||| Sbjct 4490994 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4490936 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 4490935 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4490876 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || || | ||| ||||||| || Sbjct 4490875 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGG 4490828 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 4490826 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490767 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || ||||| ||||| || | ||||| Sbjct 4490766 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4490708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 4490707 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4490648 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || ||||| || || | || ||||||| || Sbjct 4490647 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 4490600 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 4490598 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 4490539 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | |||||| Sbjct 4490538 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 4490479 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 4490478 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4490419 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 4490418 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 4490371 >seq54 Length=15836216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| | | | || || || | |||||| ||||||||| | || ||| | ||| Sbjct 984643 ATGCAAATCTACATGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTCAAGCCCAGT 984702 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCC-CCGCGGACCA 40808 |||| | | | | |||| ||||| | ||||| |||||||||| || | | ||| Sbjct 984703 GACACCATCGAGAATGTCAAAACCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGCCCA 984762 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || |||||||| ||||| || | ||| ||| || || || Sbjct 984763 GCAGCGTCTGATTTTTGCAGGCAAACATCTGGAGGATGGCTGCAGTCTCTCAGAGTATAA 984822 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||||||||| || |||| ||| | || ||| ||| | |||| || Sbjct 984823 CATCCAGAAACAGTCCAC-CTGTAGCTGGTGCTGCACCTGAGCGG 984866 >seq27 Length=35828716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || || | ||||||||||||||||| |||| ||| Sbjct 23531897 GGCATCCCCCCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGACGGCCGC 23531838 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || ||| ||||||||||||||||| Sbjct 23531837 ACTCTCTCAGACTACAACATCCAGAA 23531812 >seq72 Length=11040415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || |||| || || | || || |||||||| || | | ||| || Sbjct 7000181 AAAATGCAGATTGTCATAAATACCCTAATGGAAAAGACCATCACTCTCAAAATTGAACCC 7000122 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | | | | ||| | |||| || |||| || || || || || || | ||| Sbjct 7000121 TCGAATACAATAGAAAATGTAAAGGCCAAGATTCGGGATAAGGAAGGAATTCCTCCTGAC 7000062 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || |||||||| ||||| || | ||||| | |||||| Sbjct 7000061 CAGCAGGGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAGGCACCTTGTCTGACTAC 7000002 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| || || ||| | ||||| ||||| |||||| || Sbjct 7000001 AACATTCAAAAAGAGTCAACGCTTCATCTTGTGTTGAGC 6999963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204052555520