Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7 122 6e-23 seq28 120 2e-22 seq5 86.0 4e-12 >seq7 Length=94539749 Score = 122 bits (134), Expect = 6e-23 Identities = 348/531 (66%), Gaps = 17/531 (3%) Strand=Plus/Plus Query 97009 GGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAA 97068 |||||||| || || || | |||||| || | || | ||| ||||||||| ||| Sbjct 47936681 GGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGTAA 47936740 Query 97069 ATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAA---TCAGTGACATGG 97125 || || | |||||| |||| || | ||| || || || || | ||| ||| || Sbjct 47936741 ATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGG--CTTCAGGCTCA-TGATGTGT 47936797 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC--- 97182 | ||||| | || | || ||||| || ||||| |||||||||||| |||| Sbjct 47936798 TCCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCC 47936857 Query 97183 ------ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATA 97235 || || |||| || || || | ||| ||||| ||||| | | ||| ||| || Sbjct 47936858 GGGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCAC-CACCTA 47936916 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| | | |||| ||||| |||||| || | | |||| ||| ||||| Sbjct 47936917 GAACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGAAGGTCTTTCGGGTTCCA 47936976 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTT 97355 ||||||| | | |||||||| || ||||| | | || || | ||| | | | Sbjct 47936977 AGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTTG 47937036 Query 97356 TAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAA 97415 | || || || |||| || ||||| || | | ||| || |||||| ||||| Sbjct 47937037 CAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAA 47937096 Query 97416 ATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACC 97475 ||||||||| | || |||||||| || || | |||||||||||||| |||| || Sbjct 47937097 ATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCC 47937156 Query 97476 AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC 97526 || | || ||| || | | ||||| ||||||| || | ||| || Sbjct 47937157 CAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCC 47937207 >seq28 Length=34889373 Score = 120 bits (132), Expect = 2e-22 Identities = 429/662 (65%), Gaps = 14/662 (2%) Strand=Plus/Plus Query 96961 GCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTT-AGTGTTGGGAAAGGCCT 97019 ||||| |||||| || | | | ||| ||| ||| || ||| || | |||||||| | Sbjct 14578181 GCTTTGAAATCACCAGTTGTTTCAACCTT-CTGAAGAATTTTGAGCTTGGGGAAAGGTCC 14578239 Query 97020 GGGAGTTCGCGTAAGCTGCTCTGTGAG-AGCATCAATGTGATTCACATAAATGTGAGCAT 97078 || |||| |||| || | || ||| ||| ||||||||| |||||| | |||| Sbjct 14578240 TGGTTCTCGCTGGAGCTAAACTTTCAGCAGC-TCAGTGTGATTCAGGTAAATGAGTGCAT 14578298 Query 97079 CTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAG 97138 |||| ||||| | | ||| || || || | | |||| || || |||| || | Sbjct 14578299 CTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTGCAATCA--CAGG 14578356 Query 97139 TTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTT 97198 | | | ||| || || ||| | ||||||||| | | ||| | || |||| | | Sbjct 14578357 TGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCCTGTCTCCTGAACCCT 14578416 Query 97199 GATATAACTGACAGGAAAGCTTTCCA----TCACACACATAAAACTGACTCAATACATGA 97254 || | || ||||| ||| ||| |||| | || | ||||| | | |||| Sbjct 14578417 AGTACAGCTAGCAGGACAGC---CCAATGTTCAC-CTCACAGAACTGGCAAAGAGCATGG 14578472 Query 97255 CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTT 97314 ||||| |||| ||||| | |||| || | ||||||| ||||||| || |||||| Sbjct 14578473 CAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGATTCCAAACACACATGAAGATTCTT 14578532 Query 97315 CTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCT 97374 || ||| ||||| || | || || | | | || | | || || || |||| Sbjct 14578533 CTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTGGTCTACTCCTTGA 14578592 Query 97375 CCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCA 97434 || ||||| || ||| ||| |||||| || |||||||||||||| || || ||| Sbjct 14578593 CCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCCTCCACTGAAAGCCA 14578652 Query 97435 TAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGAC 97494 ||||| || || ||||||| ||||| ||| || || | || ||| || Sbjct 14578653 TAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAGTCCCAGGCTGTCCAAAAAGTCT 14578712 Query 97495 CTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTA 97554 | |||||| | |||||||| || | || || | | || ||||| | || Sbjct 14578713 CAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTTCTTTAGCATTGGTG 14578772 Query 97555 GATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTT 97614 ||| | |||||| |||| ||| || |||| |||| | || || || || ||| ||| Sbjct 14578773 GATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCAGAACACAAGCTTGGTT 14578832 Query 97615 GT 97616 || Sbjct 14578833 GT 14578834 >seq5 Length=100893473 Score = 86.0 bits (94), Expect = 4e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 97397 CTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTT 97456 ||| ||||| ||| |||||||||||||| || || |||||||| || || | ||||||| Sbjct 90690684 CTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAATCTCCTT 90690743 Query 97457 CTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAA 97516 |||| | || |||| || || | || ||| || | ||| ||||| |||||||| | Sbjct 90690744 CTTCCCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGA 90690803 Query 97517 TGTGCACACC 97526 | | ||| || Sbjct 90690804 TCTTCACTCC 90690813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774059436640