Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 >seq1 Length=129759341 Score = 109 bits (120), Expect = 1e-18 Identities = 106/133 (80%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||||||||||||||| ||||||||| | || ||||| Sbjct 85852812 GCATTTTTTGGAGCCCAGCTGAATTCTTTTATCCATGTGATTATGTACTCATACTATGGG 85852871 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||| |||||||| ||||||||||| || | || | Sbjct 85852872 TTAACTGCATTTGG-CCCATGGATTCAG-AAGTATCTCTGGTGGAAACGGTACTTGACCA 85852929 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 85852930 TGTTGCAGCTGGT 85852942 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | ||||| ||||| ||||| ||||| || || ||| Sbjct 85851139 TGGTGGTACTTTGTATCAAAAGGAGTTGAATATTTGGACACGGTTTTTTTTATCCTAAGG 85851198 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| ||| || || ||| || || ||||||||||| | ||| |||||||| | Sbjct 85851199 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 85851258 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | || ||||| || Sbjct 85851259 TGGTGGATTGGAATTAAGTGGGTGGCAGGAGGACA 85851293 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | | || ||||| || || |||| ||| | || ||||| || Sbjct 85854906 GGTTCAGTTCCATGTGACCATTGGACACACAGCATTGTCACTTTGGAATGACTGCCCCTT 85854965 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||| ||||| || ||| | | ||| ||||| | || || |||||||| || ||| Sbjct 85854966 CCCAAAGTGGATGCACTGGGCTCTGATTGTCTATGCCATCAGCTTCATATTTCTCTTTCT 85855025 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 ||||||||||||| | |||||||| Sbjct 85855026 TAACTTCTATTTTCGGACATACAA 85855049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923169658014080