Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq93 116 4e-21 seq85 111 2e-19 seq109 100 3e-16 seq48 100 3e-16 seq34 98.7 1e-15 seq3 95.1 1e-14 seq8 87.8 2e-12 seq96 82.4 9e-11 seq14 82.4 9e-11 >seq93 Length=5582385 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 4491092 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAG 4491151 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | ||||||||||| || | || || || ||| ||| || || | || Sbjct 4491152 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4491211 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || | ||||| || | |||||||| ||||| || || ||||||||| Sbjct 4491212 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACA 4491271 Query 43173 AAGATTTGCATTTT 43186 |||||||||||||| Sbjct 4491272 AAGATTTGCATTTT 4491285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 4490863 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 4490922 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || || || ||| ||| || || | | Sbjct 4490923 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 4490982 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 4490983 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4491042 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 4491043 GAAGATCTGCAT 4491054 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 4490635 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 4490694 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | || || || ||| ||| || || | | Sbjct 4490695 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 4490754 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 4490755 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4490814 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 4490815 GAAGATCTGCAT 4490826 >seq85 Length=6926877 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | ||| | |||| |||| ||| |||||| || || ||||| |||| Sbjct 1866073 TCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1866014 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || |||| || ||||| || || || || || || | ||||||||| | || Sbjct 1866013 CAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1865954 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| ||| |||| || | | ||||| || | || || Sbjct 1865953 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTAC 1865894 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| ||||||| || || |||||||| |||||| Sbjct 1865893 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1854269 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1854210 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1854209 TACTAACGAGGA 1854198 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | || |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1856840 TCTCCCCGTCGGGTAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1856781 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1856780 ATACTAACGAGGA 1856768 >seq109 Length=3474990 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 ||| | |||| || | ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 2998613 AATATCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 2998672 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 2998673 CCACTATACTAACGAGGA 2998690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2418371 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2418430 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2418431 TACTAACGAGGA 2418442 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 887949 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 887890 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 887889 ATACTAACGAGGAGTG 887874 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| || Sbjct 2899166 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCATTA 2899107 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2899106 TACTAACGAGGA 2899095 >seq48 Length=18382006 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 12272411 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12272470 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 12272471 ATACTAACGAGGA 12272483 >seq34 Length=27469976 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10978372 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10978313 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10978312 TACTAACGAGGA 10978301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11023136 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11023077 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11023076 TACTAACGAGGA 11023065 >seq3 Length=107953029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 90518859 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 90518800 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90518799 TACTAACGAGGA 90518788 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/175 (72%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 |||| ||||| || | || || ||||||||||| ||||| ||||| | ||||||||| Sbjct 38816819 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCA 38816878 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || || || ||| |||| || || | ||| | ||||| || | | Sbjct 38816879 GGAGGGATGCCTTCTTTATCC-TGATCTTAGCCTTTAAAGTCTCAGTGGTGTCACTGGGT 38816937 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 ||||| || | |||||||| ||||| | || ||||||| ||||||||||||| Sbjct 38816938 TCCACCTCCAGGGTGATGGTCTTGCCATTCAGGGTCTTTATGAAGATTTGCATTT 38816992 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 93553189 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 93553130 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 93553129 TACTAACGAGGAT 93553117 >seq8 Length=93792748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| |||||||| |||||||||||| | |||||||||||||||| |||| Sbjct 90255930 GGGAATCGAACCCCGGTCTCCCACGTGACAGGCGGGGAAACTCACCACTATACTAACGAG 90255989 Query 60136 GATTGAATATATA 60148 || | |||||| Sbjct 90255990 GACGGCGTATATA 90256002 >seq96 Length=5265885 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 || |||||||||||||||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 5135268 GGTAATCGAACCCTGGTCTCCCGGGTGACAGGCAGGGATACTCACCACTATACTAATGAG 5135327 Query 60136 GAT 60138 ||| Sbjct 5135328 GAT 5135330 >seq14 Length=62548349 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| |||||||| ||||||||| || |||||||||||||||||| ||| Sbjct 37529308 GGGAATCGAACCCCGGTCTCCCACGTGACAGGTGGGGATACTCACCACTATACTAAGGAG 37529367 Query 60136 GAT 60138 ||| Sbjct 37529368 GAT 37529370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800788562560