Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 3e-15 seq21 93.3 4e-14 >seq9 Length=85640724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 49076101 AACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 49076160 Query 16018 AGGATTTTTTG 16028 ||||||| || Sbjct 49076161 GGGATTTTCTG 49076171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | || || ||||| || || || ||||| || |||| || | Sbjct 49095632 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 49095691 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| |||||||||||||| || || || ||||| || ||||| || || ||||| | Sbjct 49095692 TTAGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 49095751 Query 16377 CAACCA 16382 | |||| Sbjct 49095752 CTACCA 49095757 >seq21 Length=46401353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||||| ||||||||| || Sbjct 19708523 TCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCTTG 19708464 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 19708463 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGGCT 19708404 Query 16379 ACCAATCGCTCACC 16392 || | ||||| || Sbjct 19708403 ACAACACGCTCTCC 19708390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498402147200