Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq60 1510 0.0 seq7 149 4e-31 seq55 86.0 4e-12 >seq60 Length=14386239 Score = 1510 bits (1674), Expect = 0.0 Identities = 1323/1643 (81%), Gaps = 38/1643 (2%) Strand=Plus/Plus Query 107141 CTTAGGCAGGACTTG-ACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 |||||||||| || |||||||||||||||||| |||||| || || ||| | ||| Sbjct 5383443 CTTAGGCAGGTTTTCTACTGAGGATATTTGTCTAGAGAAGAAATACATTTTTGCTGTCAG 5383502 Query 107200 TCTGGAGTTGAACTTGATG--------------TTCTGGATTAGTTTGTAATTAAAGGCA 107245 | ||| |||||||||| | ||| || ||||||||||||| || ||| Sbjct 5383503 TTCGGAATTGAACTTGAAGTGCCTGTGACTACATTCCGGTTTAGTTTGTAATTGAAAGCA 5383562 Query 107246 TTTTGTTCTGTCCAAGGAT---CTCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGA 107301 |||| ||||||||| |||| |||||||| |||| |||||| | |||||| || | Sbjct 5383563 TTTTCTTCTGTCCAGGGATTCCATCCTCCTCTTCCTTCCCTGTGGCTGAACTCTACCAGG 5383622 Query 107302 TCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGT 107361 |||||| | ||||||||||| | | |||||||||||| |||||| | ||| | |||| Sbjct 5383623 TCTCCC-TTCCATGAAGATGTTTAGTTGGAAGAAGAAGTTTTGCCAGCAGCATTACCTGT 5383681 Query 107362 GGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTA 107421 ||||||||||||||||||||||||||||| || || || |||||||||| ||||| | | Sbjct 5383682 GGGCCCTGGGCTGCTATATGCTGCTGGCCATTATTGCTTTGAGACTTTCTCTCAGACTGA 5383741 Query 107422 AATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGG 107481 ||||||| | || | |||||||||||||| |||||| || || | || ||||||| Sbjct 5383742 AATGTGACTTTGAGCACCCGGATCTGGAGTCCAAGGACTTTCAAAGCCGGCGTTGTAGGG 5383801 Query 107482 ACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCA 107541 |||| |||||||| ||||||||||||||||| ||| |||||||| ||||| ||| ||| Sbjct 5383802 ACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAGGAGCTCCATCAATTGTTCCGGGGTCA 5383861 Query 107542 CGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAA 107601 | || ||| || ||||||||||| | | || ||||| ||||||||| ||| | | Sbjct 5383862 CCCGTGGGAACAAGGAAGCAGTGATTC-TGCTGTCCTAAGCAACCTGGAGACCAAGCATA 5383920 Query 107602 AGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGA-CTGTGAGCGCTTC 107660 || || |||| |||| | ||| | ||||||||| | |||| || |||||||| ||| Sbjct 5383921 AGAGGGAGCCTTTCACAGACACTGACTACCTCAACCTGACCAAGGAGCTGTGAGCACTTT 5383980 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||||| | |||||||||||| ||||| ||||||| |||| |||| ||||||||||||| Sbjct 5383981 AAGGCCAAGAGGAAGTTCATAGAGTTCTCACTGAGCAAAG-AGAGTTAGACTTCCCCATC 5384039 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 || || || |||||||||||||||||||||||||| ||||| ||||||||||||| ||| Sbjct 5384040 GCGTATTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAGAGGCTGCTGCGAGCTGTG 5384099 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 |||| ||| ||||| |||||||||||||| ||||||| |||||||||||| || |||||| Sbjct 5384100 TATGTCCCACAGAATATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACCTTCAAA 5384159 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| |||| Sbjct 5384160 GAGGCAGTCAAGGCGATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGCTGGTT 5384219 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||| ||||||||||| ||||| || ||||||||||| ||||||||| || Sbjct 5384220 CAGGTGGTTTATGCGTCCTGGTCCAGGGTGCAGGCAGACCTGAACTGCATGGAAGACCTG 5384279 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||| || | ||||||||||| ||||| ||||||||||| ||||||||||| || ||| Sbjct 5384280 CTCCAAAGTCCTGTGCCATGGAAATACTTCCTGAATACATGTGGGACAGACTTTCCTATA 5384339 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||| ||||| |||||||||| || ||||||||| |||| || ||||||||||||||| Sbjct 5384340 AAGACAAATGCTGAGATGGTCCAAGCGCTCAAGATGCTGAATGGAAAGAACAGTATGGAG 5384399 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || ||| ||||| |||||| ||||||||| |||||||| || | ||| ||| | |||||| Sbjct 5384400 TCAGAGATACCTACTGAGTACAAAAAAAACCGCTGGAAGTATCACTACGAGTTCACAGAC 5384459 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 | | ||| | || | ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 5384460 AAATTGTTCATGACAAACAAGAAGAAGGACCCTCCCCCTGATAATTTACCTGTGTTCACA 5384519 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| ||||||| |||||| ||| |||||||||||||||| ||||| ||| Sbjct 5384520 GGGAATGCCTATATTGTGGCTTCTCGAAACTTCATCCAACATGTCTTAGAGAACCCCAAA 5384579 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 || | |||| |||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 5384580 GCCACACAACTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCC 5384639 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 5384640 ACGCTTCAGCGTGCACCGTGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATGACACC 5384699 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || ||| || |||||||||||||||| |||||||||||| || |||||||| | ||| Sbjct 5384700 TCGGACTTGGCTGCCATCGCCAGGCTGGTCAAGTGGCAGGGTCATGAGGGAGACATGAGC 5384759 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||| |||||| |||| ||| |||||||||| | | | || | || ||||| || Sbjct 5384760 GCGGGGGCCCCTTATCCACCTTGCACTGGAATCCACCAGCGAGCTGTTTGTATTTATGGT 5384819 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||||||| ||||||| || |||||||||||||| |||| |||||||||||||| Sbjct 5384820 GCTGGGGACCTGCACTGGATGCTTCAGAACCATCACCTGCTGGCCAACAAGTTTGACCCA 5384879 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||||||||||| | || |||||||||||||||||| |||| |||||||||||||| Sbjct 5384880 AAAGTGGATGATAATGCTCTCCAGTGCTTAGAAGAGTACTTACGCTATAAGGCCATCTAT 5384939 Query 108621 GGGACTGAACTTTGAGCTGCACTGTGGG--------------CCAGGGACTGTGCCAACA 108666 ||||||||||| |||| |||| |||| |||| ||||| ||| Sbjct 5384940 GGGACTGAACTCTGAGACACACTATGGGAGAGTTTGCTACCTACAGGTCATGTGCACACA 5384999 Query 108667 TGCCCAGGGCGTACTGGTACTGTGT-GGGGTGGGGGACGAGGGCTGTGGAATCCATGGCA 108725 ||| ||| | | |||| || | | |||||||| | | |||| | ||||||| ||| Sbjct 5385000 TGCTCAGACCTTGCTGGGACAATATGGGGGTGGGAGGCCAGGGTTCTGGAATCTCTGGGG 5385059 Query 108726 TCCCCCAGGGTCAGAGGGCTGCT 108748 || || ||| | || |||||||| Sbjct 5385060 TCTCCTAGGCTAAGGGGGCTGCT 5385082 >seq7 Length=94539749 Score = 149 bits (164), Expect = 4e-31 Identities = 616/958 (64%), Gaps = 48/958 (5%) Strand=Plus/Minus Query 107681 ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCA 107740 |||| | || || || ||||||||| ||| || || ||||| || || || || || || Sbjct 16482823 ACAGATACC-CTTAGCAAAGAAGAGGCAGAGTTTCCAATTGCATATTCTATAGTAGTTCA 16482765 Query 107741 TGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATA 107800 | || ||||||| | || |||| ||| | ||| | |||| |||||||| | || Sbjct 16482764 CCACAAAATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTATGTGCCTCAGAATTTCTA 16482705 Query 107801 CTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTAT 107860 ||| | |||||||| ||||| || | || || || || | || |||| Sbjct 16482704 TTGTATTCACGTGGACAAAAAGTCTGAGGATTCCTTTTTAGGTGCAGTGATGGGCATTGC 16482645 Query 107861 TTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTG 107920 ||||| || || ||||| ||||||| || ||| ||||| ||||| || || Sbjct 16482644 GTCCTGTTTTAGTAACGTCTTTGTGGCCAGCCAGCTGGAGAGTGTGGTCTATGCTTCATG 16482585 Query 107921 GTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA-- 107978 | | | || || || ||||| ||||| ||| | ||| | || |||| | ||||| Sbjct 16482584 GAGCCGGGTCCAGGCAGACCTCAACTGCATGAAGGACCT-CTACAGAA-TGAGTGCGGAC 16482527 Query 107979 TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATG 108038 ||||||||||| | ||| || || | || || || || || |||||| || || Sbjct 16482526 TGGAAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAATCTGGAAATT 16482467 Query 108039 GTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAG 108098 ||| | |||||| || | |||| | |||| | || ||||| | | | Sbjct 16482466 GTCAGGAAGCTCAAGTCATTCATGGGTGAAAACAACCTCGAAACTGAGAAAATGCC--AC 16482409 Query 108099 TCCaaaaa----aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTAC 108154 ||| ||| ||| | |||||| | || ||||| || | || | | | || Sbjct 16482408 CCCACAAAGTGGAAA--GGTGGAAAAAGCGTTATGAAGTCATTGATGG---GAAGCTAAC 16482354 Query 108155 CAGCA-------AGATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | || |||| ||| | ||||| | || | |||||| ||| |||| | Sbjct 16482353 AAACACTGGGGCAGATAAAGTGCATCCTCCTCTCGAAAC---ACCCATTTTCTCAGGCAG 16482297 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 |||||||||||||| | | | || ||| |||| |||| || ||| ||| Sbjct 16482296 TGCCTATTTTGTGGTCAGTAGGAACTATGTGGGTTATGTGCTAGAAAATGAAAAAATCCA 16482237 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 || | | || |||| ||||||||||| |||||||| ||| | |||||||||||| | Sbjct 16482236 AAAGTTTATAGAGTGGGCAAAAGACACCTACAGCCCCGATGAATATCTCTGGGCCACCAT 16482177 Query 108326 TCAGCGTGCTCCGTGGA-TGCCTGG--CTCTGTTCCT-AGCCACCCCAAGTATCACATCT 108381 ||| | | ||| || | | ||||| | ||| | | ||| | ||||| ||| | Sbjct 16482176 TCAAAG-GATCCCTGAAGTCCCTGGTGCACTGCCCTTGAGCTAT---AAGTACGACACAT 16482121 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | | ||| | ||||| ||||| ||| | || || ||||| || Sbjct 16482120 CTGACATGCAGGCGGTTGTGAGGTTTGTCAAATGGCACTACTATGAAGGCGATGTTTCCA 16482061 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| ||| |||| | | || | || ||| ||| Sbjct 16482060 AGGGCGCCCCCTACCCGCCCTGCAGTGGCGTCCACGTGCGCTCCGTGTGTGTTTTTGGGT 16482001 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGA 108561 | |||||| || ||||||| || | || || ||| | || || |||||||||||| Sbjct 16482000 CAGGGGACTTGAACTGGATGCTACGCAAGCACCACTTGTTTGCCAACAAGTTTGAC---- 16481945 Query 108562 GGGTGGATGATAACGTC------CTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGC 108613 ||||||| | || || || ||||| || || ||| |||| | ||||| || Sbjct 16481944 --GTGGATGTTGACCTCTTTGCTCTCCAGTGTTTGGATGAGCACCTGAGGCATAAAGC 16481889 >seq55 Length=15682463 Score = 86.0 bits (94), Expect = 4e-12 Identities = 225/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 107697 AAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||| ||| || ||||| | || || ||||| |||| | | |||||| Sbjct 14899994 AAAGAAGAAGCT-GAGTTCCCTTTGGCATATATCATGGTCATCCACAAAGACTTTGAAAC 14900052 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| |||| | | ||| ||| | || || || | |||||||| || ||||| Sbjct 14900053 ATTTGAAAGGCTCTTCAGGGCCTGTTATACACCCCAAAATGTCTACTGTGTTCATGTGGA 14900112 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTA-TTTCCTGCTTCCCCA 107874 || |||| || ||| ||||||||||||| || | | || | ||| ||| | | Sbjct 14900113 TGAGAAGGCCACAGCTGCTTTCAAAGAGGCAGT-GGGAAAACTACTGAGCTGTTTCTCAA 14900171 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 ||| ||| ||||| |||| || | ||||| ||||| ||| || | || | Sbjct 14900172 ATGCCTTTCTGGCCTCTAAGAGGGAGTCTGTGGTCTATGCAGGAGTGTCTAGGCTCCAGG 14900231 Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA---GTGCCATGGAAGTACTTAC 107991 | ||||||||||| ||| |||| || | | |||| || || ||||||||| | Sbjct 14900232 CCGACCTGAACTGCATGAGAGACCTGAT---GGCCTCAGAGGTTCCCTGGAAGTACGTGA 14900288 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||| ||| |||||| | || ||||| Sbjct 14900289 TTAACACCTGTGGGCAAGATTTCCCCCTGAAAACCAA 14900325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348258816874848