Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 150 1e-31 seq28 123 2e-23 >seq7 Length=94539749 Score = 150 bits (166), Expect = 1e-31 Identities = 375/571 (66%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || ||||| || || || ||||| ||| | ||||| |||||||| || ||| || Sbjct 47937140 AAGAAGGAGATTTAGGCCCAGTTTATGGCTTTTAGTGGAGGCATTTTGGGGCAGAACATA 47937081 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 || ||||| || |||||| || ||||||||||| || | ||||| |||||| | Sbjct 47937080 AAGATATGAATTCAGATTATTCAGGCCAAGGAGTAGACCAGCTGCAAAAAGTTATTGACA 47937021 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 ||| |||| ||||| | ||||||||||| | || || |||||| | ||||| Sbjct 47937020 CAATCAAAAGTAACCCTGAGGACAGAAGAATCCTCACGTGTGCTTGGAACCCGAAAGACC 47936961 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||| | || |||||||| || ||| | ||||| || || || | || | | Sbjct 47936960 TTCCTCAGAGGGTGTTGCCTCCCTGCCATGCCGTCTGCCAGTTCTAGGTGGTGAACAGTA 47936901 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT---------GGGACTGGGTGTTC 20503 | |||| || || |||| || | || | || || |||| || || | Sbjct 47936900 AGCTGTCCTGCCAGCTGTACCAGAGCTCAGGAGACATGGTCCCGGGGGGAAGAGGGGTGC 47936841 Query 20504 CTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAA 20563 ||||||| || || || || ||||| || || ||||| | ||| | | | | Sbjct 47936840 CTTTCAACATGGCCAGCTACCACCTGCTCACCTACATGATGGAACACATCATGAGCCTGA 47936781 Query 20564 AAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAAC 20623 | | |||||||| || || || ||||| | ||||||||||| ||||| | || | Sbjct 47936780 AGCCAGGTGACTTTGTACATACTTCGGGAGATACACATATTTACCTGAATCACACTGAGC 47936721 Query 20624 CTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAA 20683 | | ||| | ||| | || || |||||| || ||||| | || ||| | | ||| Sbjct 47936720 CCCTGAAAGTTCAGCTTCCATGAGAACCAAGACCTTTCCCCAAGCTCGGCACTCTTGGAA 47936661 Query 20684 CTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCC 20743 | | | ||| ||||| |||||||| || ||| | | ||| | |||||||| | Sbjct 47936660 AAGCTGAGACAATTGCTGATTTCAAAGCTGAAGACTTTCAGATTGAAAGGTATAATCCTC 47936601 Query 20744 ATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 | | ||| ||||||||| |||| || Sbjct 47936600 AGCCAACTATTAAAATGGAAATAGCTGTCTA 47936570 >seq28 Length=34889373 Score = 123 bits (136), Expect = 2e-23 Identities = 361/554 (65%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || |||| || || || ||||| ||||| ||||| |||||||| || |||||| || Sbjct 14578672 GGAGATTCAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATATAAAGAT 14578613 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 |||| || ||||| | || ||||||||||| || | ||||| | || | | ||| Sbjct 14578612 CTGAATTCAGATTATATAGGTCAAGGAGTAGACCAGCTGCAAAAGGCTACTGACACAATC 14578553 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| ||||||||||||| | | || | ||||| |||| | ||| Sbjct 14578552 AAAACCAACCCTGACGACAGAAGAATCTTCATGTGTGTTTGGAATCTAAAAGGCCTTCCT 14578493 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 ||||| ||||||| || ||| || ||||| || | | | || | || || Sbjct 14578492 CAGATGGCACTGCCTCCCTGCCATGCTCTTTGCCAGTTCTGTGAGGTGAACATTGGGCTG 14578433 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || | |||| | | || | || | ||| ||| || ||||||| || || Sbjct 14578432 TCCTGCTAGCTGTACTAGGGTTCAGGAGACAGGGGCTTGGAGGTGCCTTTCACCATCGCC 14578373 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || ||||| ||| || | |||||||||| | || | | || | |||||||| Sbjct 14578372 AGGTATGCCTGGCTCAC--CTGTGATTGCACACATCACGGGCCTGAAGCCAGGTGACTTT 14578315 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || | || | ||||| || | |||||||| ||||| | || | | ||| | || Sbjct 14578314 GTATATACTTTGGGAGATGCACTCATTTACCTGAATCACACTGAGCTGCTGAAAGTTTAG 14578255 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | ||| ||||| || ||||| | || ||| || | ||| || | | Sbjct 14578254 CTCCAGCGAGAACCAGGACCTTTCCCCAAGCTCAAAATTCTTCAGAAGGTTGAAACAACT 14578195 Query 20698 AACGATTTTAAAGCTGATGA-TTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCC 20756 ||||| |||||||| || |||| | | ||||| || ||||| ||| | ||| Sbjct 14578194 GGTGATTTCAAAGCTGAAGACTTTTCAGATTGAAGGGTACAATCCTCATCTGACTGTTCA 14578135 Query 20757 AATGGAAATGTCTG 20770 |||||||||| ||| Sbjct 14578134 AATGGAAATGGCTG 14578121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172557390640