Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq93 91.5 1e-13 seq85 91.5 1e-13 seq72 82.4 6e-11 >seq93 Length=5582385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || ||||| || || ||||||||||| | Sbjct 4491056 CCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAA 4491115 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| || ||||| ||| |||| || || || || || || Sbjct 4491116 AGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4491175 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| ||||| || | ||| || | | | ||||||| |||||| Sbjct 4491176 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 4491235 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | ||||| |||| || |||||||| ||||||||||| Sbjct 4491236 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTT 4491285 >seq85 Length=6926877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | ||| Sbjct 1866057 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1865998 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || || | ||||||||| || Sbjct 1865997 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1865938 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| |||| ||||||| || Sbjct 1865937 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTT 1865878 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || || ||||| ||||| || |||||| Sbjct 1865877 TTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 1866741 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1866682 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | ||||||||| || Sbjct 1866681 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866622 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||||| ||||| |||||| | Sbjct 1866621 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTC 1866562 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || ||||| || || ||||| || |||||| Sbjct 1866561 TTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | |||| Sbjct 1866285 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCT 1866226 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || || | ||| ||||| || Sbjct 1866225 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 1866166 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||||| ||||| ||| ||| | Sbjct 1866165 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTC 1866106 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||||||| || || || || || |||||| Sbjct 1866105 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | || || | ||| Sbjct 1866513 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1866454 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || || | ||||||||| || Sbjct 1866453 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866394 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||||| ||||| ||||||| | Sbjct 1866393 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTC 1866334 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||||||| || || || || || |||||| Sbjct 1866333 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 >seq72 Length=11040415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||| |||||||||||||||||||| | || || | |||||||| |||| Sbjct 6999976 TGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTCCAGTTGT 7000035 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| |||| |||| || || || || | ||||||||||| Sbjct 7000036 TTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATC 7000085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333126104240