Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq80 120 3e-22 seq93 113 4e-20 seq85 98.7 9e-16 seq21 86.0 6e-12 >seq80 Length=8685383 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || || ||||| || || |||| Sbjct 8324384 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCG 8324325 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| |||||||| || ||||| |||||||||||||| || | Sbjct 8324324 TTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTATGGGG 8324265 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || || || ||| ||||| ||||| || Sbjct 8324264 TACCTGTTTCTGTCTGAGACTCAATGATGGC 8324234 >seq93 Length=5582385 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || |||||||| ||||| ||||| || |||||| | || || || || Sbjct 4491285 AAAATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4491226 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || | || ||| || |||||| | || |||||| Sbjct 4491225 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGAC 4491166 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||| ||| |||||||| ||| | || || Sbjct 4491165 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTGACTAC 4491106 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || |||||||| || || ||||| ||| | |||||||| |||| Sbjct 4491105 AACATCCAGAAGGAATCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGGTA 4491054 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 4490826 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490767 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| || |||||| | || ||||||||| Sbjct 4490766 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAG 4490707 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 4490706 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4490647 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| ||||| || || ||||| ||| | |||||||| |||| Sbjct 4490646 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGTA 4490598 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 4491054 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490995 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| || |||||| | || ||||||||| Sbjct 4490994 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAG 4490935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 4490934 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4490875 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || ||||| ||| | |||||||| |||| Sbjct 4490874 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGGTA 4490826 >seq85 Length=6926877 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || || ||| | || || || || | Sbjct 1866758 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAGC 1866817 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 1866818 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866876 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || || || |||||| ||||||| | | | ||| || || || | Sbjct 1866877 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGA-TGGACGTACTCTGTCTGACTACA 1866935 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| |||||||| || | ||||||| ||| Sbjct 1866936 ACATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGGT 1866985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || || |||||| | || || || || | Sbjct 1866530 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACAATCACCCTTGAAGTAGAGCCCAGC 1866589 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 1866590 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866648 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || || || |||||| ||||||| | | | ||| || || || | Sbjct 1866649 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGA-TGGACGTACTCTGTCTGACTACA 1866707 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || ||||| || ||||| || | ||||| || || Sbjct 1866708 ACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTGAGAGGGGG 1866756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || | Sbjct 1866302 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAAGTAGAGCCCAGC 1866361 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 1866362 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866420 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || || |||||| |||||||| || || || || || Sbjct 1866421 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866480 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || ||||| || | ||||| || || Sbjct 1866481 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866528 >seq21 Length=46401353 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| || ||| |||||||| | |||||| | ||||| |||||||| | Sbjct 19704547 GATGAACCACTGCTGAGAGAAAATCCCCGCCGCTTTGTCGTCTTTCCTATTGAATACCAT 19704606 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 || |||||| | |||||||| || || || || || |||||||| | || || ||| Sbjct 19704607 GATATTTGGCAGATGTACAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTA 19704663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753294467840