Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 114 2e-20 seq80 113 6e-20 seq3 111 2e-19 seq9 107 2e-18 >seq21 Length=46401353 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || |||||||| || ||||||| || || || | Sbjct 19708525 CCTCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCT 19708466 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||| ||||||||||| ||||||| Sbjct 19708465 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGG 19708406 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 19708405 CTACAACACGCTCTCC 19708390 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 19705635 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 19705576 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || ||||||||||| |||||| | |||||| || Sbjct 19705575 AATTTGGAAGCCATAGAAACAGCGGGCTTCGGTAATCTGAACTTCTTGGCTAAATCGCTC 19705516 >seq80 Length=8685383 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 8335814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 8335755 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 8335754 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 8335695 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 8335694 CTGTTTCTTACACCATA 8335678 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8338374 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8338315 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 8338314 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTCAGTACAGTTT 8338255 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 8338254 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 8338204 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || |||| |||||| || || || || || | Sbjct 8331334 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGTTCACAACTGGCTTCCAAGGCTCCAT 8331275 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||||||||| || | |||||| | |||||| || || || ||||| |||| Sbjct 8331274 AATAAATGGTTTCAAAAATTTGCTTATTCAATAATTGTGCCTCTGGACTCTCAAAAGGAT 8331215 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || | || | ||| | Sbjct 8331214 ACCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAACGGGGCGATGGC 8331155 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 8331154 GTTTATTTGA 8331145 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | |||||| || || | | Sbjct 8323070 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAAAATAGGTCCCTGGCACG 8323011 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || ||||| |||||||| || | ||| |||||| | | || || ||||||| Sbjct 8323010 CTGTTCTTCCTTTCCCGTATTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8322951 Query 63383 CGGTTCCA 63390 || |||| Sbjct 8322950 AGGCTCCA 8322943 >seq3 Length=107953029 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 || ||||||||||||| | ||| || | ||||||||||| ||||||||||||| ||| Sbjct 55971733 GTCACTTTCTATGATGTGTATATTATTCTCCAAGCTTTCATACTGACTACTGCAGTATTT 55971674 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| |||||| ||||| ||||| ||||| || ||| ||| | |||| Sbjct 55971673 CTTGGTTTGACTGCATATACTCTCCAATCTAAGAGGGATTTTAGCAAATTTGGAGCAGG 55971615 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 188375 TTCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAAT 188434 || |||||| | || |||||||| ||||||||| | ||||||||||||||||||| || Sbjct 55974096 TTTGGATCTTTGGGTTTGATTTTAGCATTGACTCTGAACAGACATAAACATCCCCTTAAC 55974037 Query 188435 CTGTACCTACTTTGTGGATTT 188455 |||||||| |||| ||||||| Sbjct 55974036 CTGTACCTCCTTTTTGGATTT 55974016 >seq9 Length=85640724 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 49095634 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 49095693 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | || || |||||||| ||||| ||||||||||| ||||||||||| Sbjct 49095694 AGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 49095752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || ||||||||||||||||||||||| || || | || |||||| Sbjct 49099828 AAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGGGAGATAAAA 49099887 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 49099888 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTTGATA 49099936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799083362560