Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 seq21 123 3e-23 seq80 116 5e-21 seq9 111 2e-19 >seq3 Length=107953029 Score = 158 bits (174), Expect = 2e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 55968243 TTTTTATTAACTGCTTCCAACAAACGTAACAGGTGCAGGAACAGATTGATGATATCCAAG 55968302 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | |||| | || | | || |||||||| || ||| |||| || |||||||| Sbjct 55968303 TAAAGGCTGATGGCAGCCAGTATGTATTCTTCAGGTGACAGCCTATGCATCAGTGAGTGA 55968362 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| |||||||||||||| | |||||| || ||||| || ||||||||| Sbjct 55968363 GTGTCATAGACGATGAATCCGCAGAAAAGAAGGGCTCCCCCAGCAGCCAAAACCAGCTCC 55968422 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | |||||| || | | ||||| Sbjct 55968423 ATTGTTTCGCTATAAAAAAATA 55968444 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| || ||||| ||||| ||||| |||||||||||||||| | ||||| Sbjct 55971615 CCTGCTCCAAATTTGCTAAAATCCCTCTTAGATTGGAGAGTATATGCAGTCAAACCAAGA 55971674 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| ||||||||||| | || | || ||||||||||||||| || Sbjct 55971675 AATACTGCAGTAGTCAGTATGAAAGCTTGGAGAATAATATACACATCATAGAAAGTGAC 55971733 >seq21 Length=46401353 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| |||||||| || ||||||| || || || | Sbjct 19708525 CCTCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCT 19708466 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct 19708465 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGG 19708406 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 19708405 CTACAACACGCTCTCC 19708390 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 19705635 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 19705576 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || ||||||||||| |||||| | |||||| || Sbjct 19705575 AATTTGGAAGCCATAGAAACAGCGGGCTTCGGTAATCTGAACTTCTTGGCTAAATCGCTC 19705516 >seq80 Length=8685383 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 8335814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 8335755 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 8335754 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 8335695 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 8335694 CTGTTTCTTACACCATA 8335678 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8338374 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8338315 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 8338314 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTCAGTACAGTTT 8338255 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 8338254 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 8338204 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | ||||| || |||| | Sbjct 8323070 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAAAATAGGTCCCTGGCACG 8323011 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || ||||| |||||||| || | ||| |||||| | | || || ||||||| Sbjct 8323010 CTGTTCTTCCTTTCCCGTATTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8322951 Query 66176 CGGTTCCA 66183 || |||| Sbjct 8322950 AGGCTCCA 8322943 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || ||||||||||| || || || || || | Sbjct 8331334 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGTTCACAACTGGCTTCCAAGGCTCCAT 8331275 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| || || | |||||| | |||||| || | || ||||| |||| Sbjct 8331274 AATAAATGGTTTCAAAAATTTGCTTATTCAATAATTGTGCCTCTGGACTCTCAAAAGGAT 8331215 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | || ||||| || ||||| | ||||| || ||||| || | || | ||| | Sbjct 8331214 ACCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAACGGGGCGATGGC 8331155 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 8331154 GTTTATTTGA 8331145 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || || || | | Sbjct 8309058 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 8308999 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| |||||| | Sbjct 8308998 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCTA 8308939 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 8308938 GTTCCACAGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 8308893 >seq9 Length=85640724 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 49095634 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 49095693 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 49095694 AGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 49095752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153449719680