Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5 154 1e-32 seq28 98.7 8e-16 seq7 98.7 8e-16 >seq5 Length=100893473 Score = 154 bits (170), Expect = 1e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||| || |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 90679538 TCAGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAG 90679597 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | ||||| ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 90679598 GCACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCA 90679657 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 ||||||| ||||| || | |||| || ||||| || |||||| | || ||||| || Sbjct 90679658 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGCAAGGTCTGC 90679715 >seq28 Length=34889373 Score = 98.7 bits (108), Expect = 8e-16 Identities = 378/585 (65%), Gaps = 14/585 (2%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| | | || || ||||| || | |||||||| || || |||||||||||| ||| Sbjct 14578285 GTAAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTG 14578344 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || ||| | | || || ||| || ||||||||| | || || ||| | | |||| | Sbjct 14578345 TGCAATC--ACAGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCCT 14578402 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || | || |||||||| |||||||||| | || | | ||||| || Sbjct 14578403 GTCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCACAGAACTGGCA 14578462 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 | | | || || ||||| || |||||| | | ||| | | ||||| | ||||| Sbjct 14578463 AAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGATTCCAAACACACAT 14578522 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 | ||| | | |||| || | || ||| || | | |||||||||| Sbjct 14578523 GAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTGGTC 14578582 Query 21245 CACCCCCTGACCCTCGTAGT-TGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 || || ||||| || | || || | | | || || ||||||||||| |||| Sbjct 14578583 TACTCCTTGACCTATATAATCTGAATTCAG-ATCTTTATATTCGGCCCCAAAATGCCTCC 14578641 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCC---CTCGC-GGCGGTCCCCGAAGCCCTGC 21359 |||| || || || || || || ||| || || | || || || ||| | Sbjct 14578642 ACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGG----AGAGTCCCAG- 14578696 Query 21360 GCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAG 21418 || | |||||||| | | ||| || || ||||| || || | || | ||||| Sbjct 14578697 GCTGTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAG 14578756 Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCA 21478 ||| | | | |||||| || |||||| |||||||||||||||| || |||| || Sbjct 14578757 TTCTTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCA 14578816 Query 21479 AAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTT 21523 ||||| ||||| || | || || ||| || || ||||| Sbjct 14578817 GAACACAAGCTTGGTTGTCCGCGAAGAAAGCTCATCTCTTAGGTT 14578861 >seq7 Length=94539749 Score = 98.7 bits (108), Expect = 8e-16 Identities = 193/287 (67%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| |||||| ||| ||| || ||||| || | || ||| | || || Sbjct 47936705 AGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGTAAATATGTGTATCTCCCGAAGTATGT 47936764 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||| | ||| ||| | |||| || || || ||| |||| Sbjct 47936765 ACAAAGTCACCTGGCTTCAGGCTCATGATGTGTTCCATCATGTAGGTGAGCAGGTGGTAG 47936824 Query 21033 CTGGCGATGTTAAACGGGACCCCGA---------GGCCCATGTCGGCGGACCTCTGGTAC 21083 ||||| ||||| || || ||||| || ||||||| | || ||||||||| Sbjct 47936825 CTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCGGGACCATGTCTCCTGAGCTCTGGTAC 47936884 Query 21084 AGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGG 21143 |||||||||||||||| | |||| || ||||| || | | || || ||||| Sbjct 47936885 AGCTGGCAGGACAGCTTACTGTTCACCACCTAGAACTGGCAGACGGCATGGCAGGGAGGC 47936944 Query 21144 AGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 | || || | | ||||| |||||||| || ||| | | ||| Sbjct 47936945 AACACCCTCTGAGGAAGGTCTTTCGGGTTCCAAGCACACGTGAGGAT 47936991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427763737800960