Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq21 105 6e-18 >seq21 Length=46401353 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || | || ||||| ||||||||||| | Sbjct 19708525 CCTCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCT 19708466 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||| ||||| | Sbjct 19708465 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGG 19708406 Query 14014 CTATTAATCGTTCTCC 14029 ||| | || ||||| Sbjct 19708405 CTACAACACGCTCTCC 19708390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||| || | ||||| || || ||||||||||| || ||| Sbjct 19710097 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCGAAGAAGTTAGTCTTCCCT 19710038 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| || || |||||||| ||||||||||| Sbjct 19710037 TCCAGTGAAATGTTCTCCATAAAGTCAAATGGATT 19710003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713895996800