Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 >seq14 Length=62548349 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| |||||||| |||| | ||||||| Sbjct 11959796 GGTTACCTGGGCTGCCAAGCCTTGTCAGAGATGATCAAGTTTTACCTGGAGGTGGTGATG 11959737 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 |||||||| ||||| ||||| || |||||||| ||||| || || || ||||| |||||| Sbjct 11959736 CCGCAGGCTGAAAACCACGGCCCCGACATCAAGGAGCATGTGAATTCCCTGGGGGAAAAG 11959677 Query 128994 CT 128995 || Sbjct 11959676 CT 11959675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 ||| || |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| Sbjct 11957428 AGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAATCCTACAT 11957369 Query 129164 GACTACTAA-ATAATAAA 129180 ||| | || |||| ||| Sbjct 11957368 GACAATGAAGATAAAAAA 11957351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447737236138240