Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq7 140 2e-28 seq28 120 2e-22 seq5 109 4e-19 >seq7 Length=94539749 Score = 140 bits (154), Expect = 2e-28 Identities = 354/535 (66%), Gaps = 14/535 (3%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || ||||| || || | |||||| ||||| || || ||||| ||||| Sbjct 47936679 TGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGT 47936738 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || | |||||| ||| || ||||| || || || | || | | | || Sbjct 47936739 AAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTT 47936798 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCC---- 25562 |||||||||| ||||| || ||||||||| ||||| || || ||||| ||| Sbjct 47936799 CCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCG 47936858 Query 25563 -----ATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAA 25617 ||||| || || |||||||| ||||| || || |||| || ||| || Sbjct 47936859 GGACCATGTCTCCT-GAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCACCTAG 47936917 Query 25618 AACTGACACATGGTGTAGCACGGAGG-AAGAGC-TATAAGGCCCAAGTCTTTAGGGTTCC 25675 ||||| || | || | ||| ||||| || | | | | ||| | |||||| ||||||| Sbjct 47936918 AACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGA--AGGTCTTTCGGGTTCC 47936975 Query 25676 AGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTT 25735 | || ||| || ||| | ||||| || ||||| |||| || |||| Sbjct 47936976 AAGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTT 47937035 Query 25736 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 25795 ||||||| || || || || || || |||| |||| || | | ||||| || | Sbjct 47937036 GCAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAA 47937095 Query 25796 AATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGC 25855 ||| |||||||| || || || || || |||| ||||| ||||| || || | Sbjct 47937096 AATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACC 47937155 Query 25856 CCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTT 25910 || | ||||||||||||| || |||||| | ||||||||||| || ||||| Sbjct 47937156 CCAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTT 47937210 >seq28 Length=34889373 Score = 120 bits (132), Expect = 2e-22 Identities = 382/583 (66%), Gaps = 11/583 (2%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || |||| || || | || ||||| | |||||| | || ||||| ||||| Sbjct 14578227 TGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCTCAGTGTGATTCAGGT 14578286 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | | | || ||||||| ||| | ||||| || || || | || || || | || | Sbjct 14578287 AAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 14578346 Query 25507 CCATCATGTACGTGAGG-AGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 | |||| | ||||| || | || ||||||||| | || || ||| | || ||| || Sbjct 14578347 CAATCAC--AGGTGAGCCAGGCA-TACCTGGCGATGGTGAAAGGCACCTCCAAGCCCCTG 14578403 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCG--CTCACGTAAAACTGA 25623 || || ||| || ||| |||| || || ||| | || ||||| | ||||| Sbjct 14578404 TCTCCTGAACC-CTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCAC--AGAACTGG 14578460 Query 25624 CACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCAC 25683 || | | | ||| ||||| || || || | | | |||| | ||||| | ||| Sbjct 14578461 CAAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGATTCCAAACACAC 14578520 Query 25684 ACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGA 25743 | || ||| | ||||| || |||||| |||| || | | ||||||||||| Sbjct 14578521 ATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTGG 14578580 Query 25744 TCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTC 25803 || || || || || |||| ||| || | || || || || |||| |||| Sbjct 14578581 TCTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCCTC 14578640 Query 25804 CACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCT-T 25862 ||||| || || || || || ||| ||||| | ||| | | | | || ||| | Sbjct 14578641 CACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAG-GTGGAGAGTCCCAGGCT 14578699 Query 25863 ATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 25922 ||||||||||||| ||| ||| |||| ||||||||||| | ||||| || || || Sbjct 14578700 GTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTTC 14578759 Query 25923 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 ||| | || ||||| | ||| | ||||||| |||| || Sbjct 14578760 TTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCC 14578802 >seq5 Length=100893473 Score = 109 bits (120), Expect = 4e-19 Identities = 113/147 (77%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||||| || || ||||| | |||||| Sbjct 90679555 GCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCCATG 90679614 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 90679615 T-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGGCA 90679673 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTAT 25652 | || || ||| ||||| || || || Sbjct 90679674 AAGGGCGTGGCAGGGAGGCAGCGCCAT 90679700 Score = 96.9 bits (106), Expect = 2e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || | || | ||| || |||| ||||||||| || || || ||||| |||| | Sbjct 90690678 TCATATCTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAAT 90690737 Query 25832 CTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCG 25890 |||| ||||||| | || | || ||| | ||||||||||||| || |||||||| Sbjct 90690738 CTCCTTCTTCCCGG-GCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCA 90690796 Query 25891 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||||| || ||||| || || ||||| | || ||||| || Sbjct 90690797 TCCCAGATCTTCACTCCCTTAGAAGACAGTTCTTTAGCATTGGTGGATCC 90690846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340127849955696