Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq17 156 6e-33 seq7 105 9e-18 >seq17 Length=51904812 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || ||||| |||||||||||| || || | || || |||||||| Sbjct 13371122 GTCTGGAACAACTGCTCGTCGTCCCATTCTGGATGCTCCTGTCTAAGCACGTCGCACACC 13371063 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| |||||||| || || |||||||| || ||||||||||| ||||| Sbjct 13371062 CTGTTATGTTCCCGAAGCCAGATTGTGGCATACATCATCAGGCCAGGCACCAGCCCAAAG 13371003 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 13371002 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGCGGGTAGATCATCTCT 13370943 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 13370942 GCCTGAGTCTCTTTGACAGTGGGAGGATACATCTCTCCATCAATTATCT 13370894 Score = 140 bits (154), Expect = 5e-28 Identities = 214/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 ||||| | ||| |||| | ||||| || || ||||| | |||| ||||||||||| Sbjct 13372881 GGAACACTGAATGCGGTGTAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATT 13372822 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | || | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 13372821 GAGGCTGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAG 13372762 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 || || || || || ||||||| ||||| | ||| || || || ||||| || Sbjct 13372761 TTAGGAGAACATATAGTATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCCAGTTCT 13372702 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||||||||||||||| | ||||| |||||||| |||| | | | || Sbjct 13372701 ACCATGGTCTCACCGAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAG 13372642 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | |||| ||| || ||||| || || || || | || ||||| ||||| || ||| Sbjct 13372641 AGTTCCATAGCATCAATGTCACCATAGAGCTCCTCTAACTCTGCAGCCATTTCTTTCTCT 13372582 Query 8972 CCTGT 8976 ||||| Sbjct 13372581 CCTGT 13372577 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| |||| |||||| ||||| | || |||||| ||| ||| | || Sbjct 13369944 TCTCACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 13369885 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || | |||||| | ||||||||||||||||| Sbjct 13369884 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGTAAACATCATATTGGTGCCCTGGGGATC 13369825 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | |||||| ||||||||||| | | || ||| || || | Sbjct 13369824 TGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAGTTC 13369765 Query 10208 ttttttACCTG 10218 || || |||| Sbjct 13369764 CTTCTTTCCTG 13369754 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| ||||| | ||||| ||||| || ||||| || ||||| || || | ||| Sbjct 13369155 ACCTTTCACCCCCATGGGAGTAGGACAGTCATGAGGTACAGGAGGAAGGGCTCTGGTGTA 13369096 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| ||||| || |||||||||||| || |||||| | || || | || Sbjct 13369095 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGAACATTATAAGTCGG 13369036 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 ||||| |||||||||| | ||| ||||| Sbjct 13369035 CGGGCTATCAATCAAATGTGCTCTTGCTGAA 13369005 Score = 96.9 bits (106), Expect = 5e-15 Identities = 185/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 9320 CACTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGG 9379 ||||||| | |||||| ||||| | ||||| ||||| || | |||||||| || || Sbjct 13371807 CACTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAAGTCCATGCT 13371748 Query 9380 TCATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAAT 9437 || | ||| || |||||||| | || ||| || || |||| |||||||| Sbjct 13371747 CCAGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGCTGTACTCCTGGTTATCAAT 13371690 Query 9438 CTCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATAT 9497 | ||| || || || | |||| |||||||| || | ||||||| || | | || Sbjct 13371689 TTGAAAGGCGTCAGGTAGAAGAGGGTGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAAT 13371630 Query 9498 ACGATTTTGGTACTGGAA--CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGA 9555 ||| |||||||||||||| | || || ||||| ||||| | |||| || | Sbjct 13371629 ACGGTTTTGGTACTGGAATTCTTGGT--TGAAAAGCAGCTCGGGGTCAAACTTCAGTTTG 13371572 Query 9556 AAGTGGTAGCCGCTGAGCTGCTGAACATA 9584 |||| |||||||| | ||||| ||||| Sbjct 13371571 AAGTTATAGCCGCTCAAGTGCTGCACATA 13371543 >seq7 Length=94539749 Score = 105 bits (116), Expect = 9e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || ||||| || |||||||| |||||||| |||| || |||||| ||| | | |||| Sbjct 36641649 TCGCCGCCAAATGTGCTGGGCTTCCAGTACTCCGGAGAACAGATGGGATTCCCTAGGAGG 36641708 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || ||||||||||| |||||||| | || | || ||||| || ||||||| ||| ||| Sbjct 36641709 CCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATGGAGTTTGGA 36641768 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGG 8941 || ||| || | | | || | || ||||||| || ||||| || || || || Sbjct 36641769 TGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCATGGCATCGATATCACCATATAGC 36641828 Query 8942 GCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | || || || || ||||| |||||| Sbjct 36641829 TCTTCCAACTCAGCTGCCATCTCCTTCTCTCCT 36641861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708503969370880