Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq45 174 2e-39 seq140 156 7e-34 seq109 156 7e-34 >seq45 Length=18956906 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | || || |||||||| || || ||||| || ||||| Sbjct 353961 CGCTAAGCGCCACCGAAAGGTTTTGCGTGACAACATCCAGGGCATTACCAAACCTGCTAT 354020 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| |||||||| || ||||| |||| || | | || ||||||| Sbjct 354021 CCGTCGTCTGGCTCGGCGTGGTGGTGTTAAGCGCATCTCCGGCCTCATTTACGAAGAGAC 354080 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| ||| || ||||||||| Sbjct 354081 CCGCGGAGTGCTGAAGGTTTTCCTGGAGAACGTGATCCGTGACGCTGTCACCTATACCGA 354140 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| ||||||| | || ||||| | ||||| || || Sbjct 354141 GCACGCCAAGCGCAAGACTGTCACGGCCATGGACGTGGTTTATGCTCTTAAACGCCAGGG 354200 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 354201 GCGCACCCTTTATGGCTTTGG 354221 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || ||||||||||| |||||||| || ||||| Sbjct 544386 CGCTAAGCGACACCGTAAGGTGCTCCGGGACAACATCCAAGGCATCACCAAACCCGCTAT 544445 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| | ||||| || |||||| ||||||| | |||||||||||| Sbjct 544446 CCGGCGCTTGGCTCGTAGAGGTGGTGTTAAGCGTATCTCTGGCCTCATCTATGAAGAGAC 544505 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| ||||||| ||| ||| || | || ||| || ||| ||||| Sbjct 544506 TCGTGGGGTACTCAAGGTCTTCCTGGAGAACGTGATTCGCGACGCTGTCACCTACACCGA 544565 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || || ||||||| | ||||| || | |||||||| || Sbjct 544566 GCACGCCAAGCGCAAAACGGTTACTGCCATGGACGTGGTCTACGCGCTCAAACGTCAGGG 544625 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || |||||| ||||| Sbjct 544626 TCGCACTCTTTACGGCTTTGGAGGTTAA 544653 Score = 152 bits (168), Expect = 8e-33 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | || || ||||| ||||| || ||||||||||| |||||| Sbjct 260250 GCTAAGCGCCACCGTAAGGTGCTGCGTGATAATATCCAGGGTATCACCAAGCCTGCTATC 260309 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||| || |||||||| |||| || | | ||||| |||| | Sbjct 260310 CGTCGTCTGGCTCGGCGTGGCGGTGTCAAGCGCATCTCCGGCCTCATTTATGAGGAGACT 260369 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | || ||||||| ||| ||| |||| || || || || |||||| Sbjct 260370 CGGGGGGTGCTCAAAGTCTTCCTGGAGAACGTGATCCGGGACGCCGTCACTTACACCGAG 260429 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| ||||| |||||||| | ||||| || | || || || || Sbjct 260430 CACGCTAAGCGCAAGACGGTCACGGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGG 260489 Query 16673 CG 16674 || Sbjct 260490 CG 260491 Score = 143 bits (158), Expect = 4e-30 Identities = 195/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | | || || |||||||| || || |||||||| ||||| Sbjct 284984 CGCCAAGCGCCATCGCAAGGTTTTGCGGGACAACATCCAGGGTATTACCAAGCCCGCTAT 285043 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 285044 CCGTCGCCTGGCTCGCCGAGGCGGTGTTAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 285103 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| || || | ||| ||| || ||| ||||| Sbjct 285104 TCGGGGGGTGCTTAAGGTCTTCCTGGAGAATGTGATTCGTGACGCTGTCACCTACACCGA 285163 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || |||||||| | ||||| || | || || || || Sbjct 285164 GCACGCCAAGCGCAAGACAGTTACAGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 285223 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || || ||||| ||| Sbjct 285224 GCGCACCCTCTACGGCTTCGGCGGTTAAGCTT 285255 Score = 129 bits (142), Expect = 9e-26 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||| | || || ||||||||||| || ||||||||||| || || Sbjct 291001 CGCCAAGCGCCATCGTAAGGTGCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 290942 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| || || || ||||||||| ||||||| | |||| || |||| Sbjct 290941 TCGGCGCCTGGCTCGGCGAGGCGGTGTCAAGCGTATCTCTGGCCTTATCTACGAGGAGAC 290882 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || || ||| ||| |||| || || || || || || Sbjct 290881 TCGCGGGGTCCTTAAGGTGTTTCTGGAGAACGTGATCCGCGACGCAGTCACTTACACTGA 290822 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | ||||| || | ||||| || || Sbjct 290821 GCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTCTACGCGCTCAAACGCCAGGG 290762 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| || || | |||| Sbjct 290761 GCGCACCCTCTATGGATTCGGGGGCTAAT 290733 Score = 129 bits (142), Expect = 9e-26 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||||||||||||||| ||||| || || || ||||| || || ||||| ||||| ||| Sbjct 326028 CGAGATAACATCCAAGGCATCACGAAACCGGCCATCCGACGCCTCGCTCGGCGTGGCGGA 325969 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| | || ||| | |||| ||||||| ||| | || |||| | || | Sbjct 325968 GTTAAACGTATTTCCGGACTCATCTACGAAGAGACTCGCGGGGTCCTGAAAGTGTTTTTG 325909 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||| || | || || || |||||| ||||| ||||| || ||||| ||||| Sbjct 325908 GAAAACGTGATTCGCGACGCGGTCACCTATACGGAGCATGCTAAGCGCAAGACCGTCACG 325849 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | |||||||| | || || || || || | |||| ||||| || Sbjct 325848 GCCATGGACGTTGTCTATGCGCTTAAGCGCCAGGGGCGCACTCTTTACGGTTTCGG 325793 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || ||||| || || ||||| ||||| || || Sbjct 553372 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATTCAGGGTATCACAAAGCCTGCCAT 553313 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| ||||| || |||||||| |||| || | | ||||| |||| Sbjct 553312 TCGGCGTCTGGCTCGGCGTGGCGGTGTCAAGCGAATCTCGGGCCTCATTTATGAGGAGAC 553253 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| ||||||| ||| || |||| || || || ||| ||||| Sbjct 553252 CCGTGGGGTGCTTAAGGTCTTCCTGGAGAATGTGATCCGCGACGCCGTCACCTACACCGA 553193 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || ||||||| | ||||| || | || || || || Sbjct 553192 GCACGCCAAGCGCAAGACGGTTACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 553133 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 553132 GCGCACTCTTTACGGCTTCGG 553112 >seq140 Length=1685380 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || || || ||||| || || Sbjct 737351 CGCTAAGCGCCACCGCAAAGTCCTGCGTGACAACATCCAGGGTATTACAAAGCCCGCCAT 737292 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| ||||| || || |||||| ||||||| | ||||||| |||| Sbjct 737291 TCGGCGTCTGGCTCGGCGTGGCGGTGTTAAGCGTATCTCTGGCCTCATCTATGAGGAGAC 737232 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | || | ||||| ||| || |||| ||||||| || ||| ||||| Sbjct 737231 TCGCGGGGTGCTCAAAGTTTTCCTGGAGAATGTCATCCGTGATGCTGTCACCTACACCGA 737172 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || |||||||| ||||||| || | || || || || Sbjct 737171 GCACGCCAAGCGAAAGACAGTTACTGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGG 737112 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 737111 GCGCACCCTCTACGGCTTTGG 737091 >seq109 Length=3474990 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || || || ||||||||||| |||||| Sbjct 2046327 CTCCGTGACAACATCCAGGGAATCACCAAGCCCGCCATTCGGCGTCTGGCTCGGCGTGGT 2046386 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||||| | |||| || |||| || | || | || | ||| Sbjct 2046387 GGTGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAAGTTTTC 2046446 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||||||| ||| || || ||| ||||||||||||||||| ||||| ||| Sbjct 2046447 CTGGAGAACGTTATCCGTGACGCCGTCACCTACACCGAGCACGCTAAACGCAAGACGGTC 2046506 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | ||||| || | || || || || || | | || || ||||| Sbjct 2046507 ACAGCTATGGATGTGGTCTACGCGCTCAAGCGCCAGGGGCGCACCCTCTACGGCTTTGG 2046565 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||| || ||||||||||| || || |||||||| || || Sbjct 2076222 CGCCAAGCGTCACCGCAAGGTTCTGCGTGATAACATCCAGGGCATAACCAAGCCTGCCAT 2076163 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || |||||||| ||||||| | |||| || || | Sbjct 2076162 CCGGCGTCTGGCTCGCCGTGGCGGTGTCAAGCGCATCTCTGGTCTCATCTACGAGGAAAC 2076103 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| | | ||| |||| || || || ||| ||||| Sbjct 2076102 CCGCGGGGTGCTCAAGGTCTTCCTGGAAAACGTGATCCGCGACGCCGTCACCTACACCGA 2076043 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | ||||| || | || || || || Sbjct 2076042 GCACGCCAAGCGCAAGACGGTCACTGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 2075983 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 2075982 GCGCACCCTCTATGGTTTCGG 2075962 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 2057618 GCCAAGCGCCACCGCAAAGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATT 2057559 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || ||||||||| ||||||| | | || || |||| Sbjct 2057558 CGGCGTCTGGCTCGGCGTGGCGGTGTCAAGCGTATCTCTGGTCTCATTTACGAGGAGACC 2057499 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||||||| ||| || |||| || ||| || ||| |||||| Sbjct 2057498 CGCGGGGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCTGTCACCTACACCGAG 2057439 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | |||||| | ||||| || | || || || || Sbjct 2057438 CACGCCAAGCGGAAGACAGTCACGGCTATGGATGTGGTCTACGCGCTCAAGCGCCAGGGG 2057379 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||||||||| Sbjct 2057378 CGCACCCTGTATGGTTTTGG 2057359 Score = 152 bits (168), Expect = 8e-33 Identities = 193/263 (73%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||||| | || || |||| ||||||||||| || |||||||| |||| Sbjct 2011378 CGCTAAGCGCCATCGCAAGGTC-CTAAGAGACAACATCCAAGGCATTACCAAGCCTGCTA 2011436 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || ||||| || ||||| || |||| || | |||| || |||| Sbjct 2011437 TCCGGCGCCTGGCGCGGCGTGGCGGTGTCAAACGCATCTCCGGGCTTATCTACGAGGAGA 2011496 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || || || ||| |||| Sbjct 2011497 CCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCG 2011556 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | ||||| || | Sbjct 2011557 AGCACGCCAAGCGCAAGACAGTCACTGCCATGGACGTGGTCTACGCGCTCAAACGCCAGG 2011616 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | || | | ||||| || ||| Sbjct 2011617 GGCGCACCCTCTATGGCTTCGGA 2011639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073049549936