Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq85 102 7e-17 seq93 98.7 9e-16 >seq85 Length=6926877 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| ||||| || ||| | || ||| | || || ||| ||| Sbjct 1865845 AATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTAGAGCCCAG 1865904 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 1865905 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1865964 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | ||| || || || ||||| Sbjct 1865965 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGA 1866000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || ||||| || | |||||| | || || ||| ||| Sbjct 1866757 AATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAG 1866816 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 1866817 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866876 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTAT 24167 ||||| |||| | | ||| || || || |||||| ||| | | ||| || || Sbjct 1866877 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTC--TGACTAC 1866934 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || || | ||| | || | | ||||| ||||| Sbjct 1866935 AACATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 1866984 >seq93 Length=5582385 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | |||||||| || | ||||| || | || ||| | || || ||| | Sbjct 4491286 CAAAATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 4491227 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || ||||||||||| |||||||| Sbjct 4491226 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGA 4491167 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||||| || || | | |||||||| || ||||| Sbjct 4491166 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 4491128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429923675884560