Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq85 123 2e-23 seq30 104 2e-17 seq82 100 2e-16 seq1 100 2e-16 >seq85 Length=6926877 Score = 123 bits (136), Expect = 2e-23 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | |||| || |||||| |||||| || || ||||| | Sbjct 1866076 CATTCCC-CCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGT 1866018 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||| |||| |||| || | ||||| |||||||| || || | || || || | Sbjct 1866017 CAGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAG 1865958 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||| ||||| || ||| ||| ||||||| || || || | | Sbjct 1865957 GAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCT 1865898 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTAC 38324 | || || | || || ||||||||||| ||||||||||| || ||||||| ||| | || Sbjct 1865897 CTACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATTGTCTGAC 1865838 Query 38325 AA 38326 || Sbjct 1865837 AA 1865836 >seq30 Length=33571567 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 || ||| ||||||||||||||||||| |||||||||||||| || ||||| ||||| Sbjct 21065792 CCTGTTACCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTTGTTAA 21065733 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||| ||||||||||||| |||| Sbjct 21065732 TCCATTCATGCGTGTCACTAATTAGACAACGA 21065701 >seq82 Length=7794654 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||||||| ||| | || |||||| | Sbjct 7075553 AAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGTAACAGTGGGAATCTCCT 7075494 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||| |||||||||||||||||||| Sbjct 7075493 TCATCCATTCATACGCGTCACTAATTAGATGAC 7075461 >seq1 Length=129759341 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||||||| ||||| || |||||| | Sbjct 129237176 AAGCCTGTTCCCTTGGCTGTGGTTTGGCTGGATAGTAGGTAGGGACAGTGGGAATCTCTT 129237235 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||||||||| || Sbjct 129237236 TCATCCATTCATGCACATCACTAATTAGATGATGA 129237270 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||| || |||||| || ||| | || Sbjct 128004463 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAATATATAGGGACAGTGGGAATTTTGT 128004404 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | |||| |||||| | ||||||||||||||| Sbjct 128004403 TTATCCATTCATGTGTGTCACTAATTAGATG 128004373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937598738512