Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq21 123 3e-23 seq80 116 5e-21 seq9 111 2e-19 >seq21 Length=46401353 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| |||||||| || ||||||| || || || | Sbjct 19708525 CCTCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCT 19708466 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||||||| Sbjct 19708465 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGG 19708406 Query 32803 CAATAAGTCTCTCTCC 32818 | | || | |||||| Sbjct 19708405 CTACAACACGCTCTCC 19708390 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 19705635 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 19705576 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || ||||||||||| |||||| | |||||| || Sbjct 19705575 AATTTGGAAGCCATAGAAACAGCGGGCTTCGGTAATCTGAACTTCTTGGCTAAATCGCTC 19705516 >seq80 Length=8685383 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 8335814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 8335755 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 8335754 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 8335695 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 8335694 CTGTTTCTTACACCATA 8335678 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8338374 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8338315 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 8338314 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTCAGTACAGTTT 8338255 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 8338254 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 8338204 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | |||||| || |||| | Sbjct 8323070 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAAAATAGGTCCCTGGCACG 8323011 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || ||||| |||||||| || | ||| |||||| | | || || ||||||| Sbjct 8323010 CTGTTCTTCCTTTCCCGTATTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8322951 Query 63187 CGGTTCCA 63194 || |||| Sbjct 8322950 AGGCTCCA 8322943 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || || || || | Sbjct 8309058 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 8308999 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| |||| || |||| |||||| | Sbjct 8308998 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCTA 8308939 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 8308938 GTTCCACAGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCAT 8308893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || ||||||||||| || || || || || | Sbjct 8331334 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGTTCACAACTGGCTTCCAAGGCTCCAT 8331275 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| || || | |||||| | ||| || || | || ||||| |||| Sbjct 8331274 AATAAATGGTTTCAAAAATTTGCTTATTCAATAATTGTGCCTCTGGACTCTCAAAAGGAT 8331215 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | || ||||| || ||||| | ||||| || ||||| || | || | ||| | Sbjct 8331214 ACCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAACGGGGCGATGGC 8331155 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 8331154 GTTTATTTGA 8331145 >seq9 Length=85640724 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 49095634 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 49095693 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 49095694 AGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 49095752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633613371219200