Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq85 113 4e-20 seq93 107 2e-18 seq72 86.0 5e-12 >seq85 Length=6926877 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||||||| |||| || | ||||| ||| | Sbjct 1866073 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 1866132 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| ||| ||| ||||| || || ||||| |||||||| Sbjct 1866133 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 1866192 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | ||||||| || ||| || || ||||| Sbjct 1866193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAA 1866252 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || | || || | || ||||| |||| Sbjct 1866253 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGGAA 1866302 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||||||||| ||||||| | ||||| ||| | Sbjct 1866301 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAAGTAGAGCCCAG 1866360 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| ||| ||| ||||| ||||| || || |||||||| Sbjct 1866361 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866420 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| ||||| | ||||| | || || || || ||||| Sbjct 1866421 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866480 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || | || || | || ||||| |||| Sbjct 1866481 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGGAA 1866530 >seq93 Length=5582385 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||| || || ||||||| | || |||||| | Sbjct 4491283 AATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4491224 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || |||||||| ||||| || ||||| Sbjct 4491223 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4491164 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||| | || ||| | || ||||| Sbjct 4491163 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTGACTACAA 4491104 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| || || || Sbjct 4491103 CATCCAGAAGGAATCGACCCTGCA 4491080 >seq72 Length=11040415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| ||||| |||||||| ||| | | || ||||| ||||||||| | ||| Sbjct 7000085 GATAAGGAAGGAATTCCTCCTGACCAGCAGGGACTGATCTTTGCTGGCAAACAACTGGAA 7000026 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||| || || ||||| ||||||||||| || ||||| ||| | ||| | Sbjct 7000025 GATGGAGGCACCTTGTCTGACTACAACATTCAAAAAGAGTCAACGCTTCATCTTGTGTTG 6999966 Query 25212 AGGCT 25216 || || Sbjct 6999965 AGCCT 6999961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315578652880