Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq85 113 4e-20 >seq85 Length=6926877 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||| |||||||| |||| ||||| || || ||| Sbjct 1865846 ATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTAGAGCCCAGT 1865905 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 1865906 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1865965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| |||||| | || || || ||| | || || |||||| Sbjct 1865966 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAAC 1866025 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 1866026 ATCCAGAAGGAGTCCAC 1866042 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || |||||||| || | || |||||||| || ||| | Sbjct 1866074 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAGC 1866133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || |||||||||||||| ||||| || || || Sbjct 1866134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 1866193 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| |||||| | || ||| || || | || || |||||| Sbjct 1866194 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAAC 1866253 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 1866254 ATCCAGAAGGAGTCCAC 1866270 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || |||| |||||||| || ||| | Sbjct 1866530 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACAATCACCCTTGAAGTAGAGCCCAGC 1866589 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 1866590 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1866649 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| || || | || || |||||| Sbjct 1866650 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 1866709 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 1866710 ATCCAGAAAGAGTCCAC 1866726 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || |||||||| || |||| |||||||| || ||| | Sbjct 1866302 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAAGTAGAGCCCAGC 1866361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 1866362 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1866421 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || || || ||| | || || |||||| Sbjct 1866422 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAAC 1866481 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 1866482 ATCCAGAAGGAGTCCAC 1866498 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || | || ||||| || || ||| | Sbjct 1866758 ATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAGC 1866817 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || || || || || || Sbjct 1866818 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1866877 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| || || | || || |||||| Sbjct 1866878 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAAC 1866937 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || ||||| ||||| | ||| | || |||| ||| | |||||| || Sbjct 1866938 ATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGGTGTT 1866988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715968496880