Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq85 176 8e-39 seq93 165 2e-35 seq24 127 4e-24 seq72 111 3e-19 seq54 93.3 8e-14 >seq85 Length=6926877 Score = 176 bits (194), Expect = 8e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| || || ||||||||||| |||||||| || || || Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| |||||||| || || | || || ||||| || || Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||||||||| |||||||||||||| |||||||||||| ||| | ||||| Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCTAC 1866806 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| ||||| || || || | |||||| ||||| ||||||||| Sbjct 1866805 CTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | || ||||| Sbjct 1866054 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCC 1865995 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||||||| || || || || || ||||| || || ||||||||||||||||| Sbjct 1865994 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1865935 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| |||||||||||| | ||||| || | |||||||||||| Sbjct 1865934 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTTTTA 1865875 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| | ||| || || || ||||||||| Sbjct 1865874 CCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 170 bits (188), Expect = 4e-37 Identities = 166/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || | || | |||||||| Sbjct 1866282 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1866223 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||||||| || || || || || ||||| || |||||||| ||||||||||| Sbjct 1866222 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGG 1866163 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| |||||||| ||| | |||||||| | ||| ||||| || Sbjct 1866162 ATCTTTGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTACTTCAAGGGTAATGGTCTT 1866104 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| ||||| ||||||||| Sbjct 1866103 ACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 170 bits (188), Expect = 4e-37 Identities = 166/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | || ||||| Sbjct 1866510 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCC 1866451 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||||||| || || | || || ||||| || || ||||||||||||||||| Sbjct 1866450 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1866391 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| |||||||| ||| | |||||||| | ||||||||| || Sbjct 1866390 ATCTTTGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTACTTCAAGGGTGATGGTCTT 1866332 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| ||||| ||||||||| Sbjct 1866331 ACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 Score = 170 bits (188), Expect = 4e-37 Identities = 166/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || | |||||||| Sbjct 1866738 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1866679 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||||||| || || | || || ||||| || || ||||||||||||||||| Sbjct 1866678 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1866619 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||||||||| ||| |||||||| ||| | |||||||| | |||||| || || Sbjct 1866618 ATCTTTGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTACTTCAAGGGTGATTGTCTT 1866560 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| || || ||||||||| Sbjct 1866559 ACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 >seq93 Length=5582385 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | |||||||| Sbjct 4490390 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4490449 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 4490450 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 4490509 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || |||||||||||| | || ||||||| ||||||||| || Sbjct 4490510 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 4490569 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 4490570 CCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | |||||||| Sbjct 4490618 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4490677 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || |||||||| ||||||||||| || || || Sbjct 4490678 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGG 4490737 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| ||| |||||||| | || || |||| ||||||||| || Sbjct 4490738 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4490797 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 4490798 CCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || || ||||| || |||||||| || || || || || | Sbjct 4490837 AGGCGAAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 4490896 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 4490897 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCT 4490956 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| ||| ||| |||||||| | || || |||| |||| Sbjct 4490957 TTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 4491016 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 4491017 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 152 bits (168), Expect = 9e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || || || || || |||||||| || || || || || | Sbjct 4491065 AGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 4491124 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 4491125 CCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCT 4491184 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| ||| |||||||||||| | || || |||| |||| Sbjct 4491185 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 4491244 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || || || |||||||| || || || |||||| || Sbjct 4491245 ATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTTG 4491286 >seq24 Length=42784276 Score = 127 bits (140), Expect = 4e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || |||| ||| Sbjct 24274756 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGTCCATATTCC 24274697 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||| || || |||| || || | || | || |||||||||| |||||| Sbjct 24274696 AGCTGTTTCCTAGCAAAGATGAACCTCTGCTC-TCAAGAGGGATGCCTTCCTCGTCTTGG 24274638 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| ||||||| | ||||||||| | |||| || || Sbjct 24274637 ATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGTTCTACTTCAAGAATGATTGTCTTA 24274578 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| ||||| ||||||||| Sbjct 24274577 CCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 >seq72 Length=11040415 Score = 111 bits (122), Expect = 3e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||||| ||| || | || ||||| ||||||||||| ||||| || || || | || | Sbjct 6999959 GAAGGCTCAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGC 7000018 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | || || || || || || |||| || ||||| || ||||| |||| Sbjct 7000019 CTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTT 7000078 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || ||||||| ||||| || || || || | | | ||| | || | | Sbjct 7000079 CCTTATCCCGAATCTTGGCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAG 7000138 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||| ||| || | ||||| || | || ||||||||| || Sbjct 7000139 TGATGGTCTTTTCCATTAGGGTATTTATGACAATCTGCATTTTG 7000182 >seq54 Length=15836216 Score = 93.3 bits (102), Expect = 8e-14 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||| ||| ||||||||||| || ||||| | | ||||| || | || || || Sbjct 984840 GTGGACTGTTTCTGGATGTTATACTCTGAGAGACTGCAGCCATCCTCCAGATGTTTGCCT 984781 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTG-GAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 || || || || | || ||| | || | | ||||| |||||||| || || || | || Sbjct 984780 GCAAAAATCAGACGCTGCTGGGCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGTTTT 984721 Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 ||| |||||||||||| | | || || | ||||||||| || ||| | ||||| Sbjct 984720 GACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCATCAGGGT 984661 Query 68444 CTTGACGAATATCTGCAT 68461 ||| | | | || ||||| Sbjct 984660 CTTCATGTAGATTTGCAT 984643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921595304301440