Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq93 98.7 8e-16 seq85 98.7 8e-16 seq72 89.7 4e-13 >seq93 Length=5582385 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 4490630 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 4490689 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||||||||||||||| || ||||| || Sbjct 4490690 GCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 4490749 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 4490750 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4490809 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4490810 TTCACGAAGATCTGCAT 4490826 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | |||||| ||||| || || || || Sbjct 4491086 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCCAGCTGCTTGCCT 4491145 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||||||||||||||| || ||||| || Sbjct 4491146 GCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 4491205 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 4491206 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4491265 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| || ||||| Sbjct 4491266 TTTACAAAGATTTGCAT 4491282 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 4490402 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 4490461 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||||||||||||||| || ||||| || Sbjct 4490462 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 4490521 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 4490522 ACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4490581 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4490582 TTCACGAAGATCTGCAT 4490598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 4490858 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 4490917 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||||||||||||||| || ||||| || Sbjct 4490918 GCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 4490977 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 4490978 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4491037 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4491038 TTCACGAAGATCTGCAT 4491054 >seq85 Length=6926877 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| |||||| || ||||| || Sbjct 1866270 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTCCCG 1866211 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||||||||| || ||||| |||||| || Sbjct 1866210 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTG 1866151 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || || ||||||| || Sbjct 1866150 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTCTTACCGGTCAAGGTC 1866091 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1866090 TTCACGAAGATCTGCAT 1866074 >seq72 Length=11040415 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || ||||| || | ||| | ||| || ||||||||||||||||| || || || | Sbjct 6999961 AGGCTCAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCT 7000020 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| |||||||| ||||| |||| || | ||| ||||| |||||||| ||||| Sbjct 7000021 CCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCC 7000080 Query 114285 TTGTCGGCAATCTT 114298 || || |||||| Sbjct 7000081 TTATCCCGAATCTT 7000094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420122356847424