Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq14 118 1e-21 >seq14 Length=62548349 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| ||||||| |||||| | || |||||||||| || | Sbjct 11959798 AGGGTTACCTGGGCTGCCAAGCCTTGTCAGAGATGATCAAGTTTTACCTGGAGGTGGTGA 11959739 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||||||||| | ||| || ||| || ||||| ||||| |||| |||| Sbjct 11959738 TGCCGCAGGCTGAAAACCACGGCCCCGACATCAAGGAGCATGTGAATTCCCTGGGGGAAA 11959679 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || | |||||| || || | ||||| Sbjct 11959678 AGCTGACGACCCTCAGGATCAGGCTGCG 11959651 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| ||||||||||| |||||||| || || ||||||| Sbjct 11957441 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11957382 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||| | ||||||||||| || Sbjct 11957381 TAGAATCCTACATGACAATGAA 11957360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552700550126080