Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq93 123 6e-23 seq85 122 2e-22 seq54 87.8 4e-12 >seq93 Length=5582385 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 4490408 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490467 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||||||||| || || ||||| || Sbjct 4490468 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 4490527 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 4490528 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4490587 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4490588 AAGATCTGCAT 4490598 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 4490636 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490695 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || || || ||||||||||||||||| || || |||||||| Sbjct 4490696 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4490755 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| ||| Sbjct 4490756 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4490815 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4490816 AAGATCTGCAT 4490826 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 4490864 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490923 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || || || ||||||||||||||||| || || |||||||| Sbjct 4490924 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4490983 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| ||| Sbjct 4490984 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4491043 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4491044 AAGATCTGCAT 4491054 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || || |||||||| | || || ||||| || Sbjct 4491091 TTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAA 4491150 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| || || || ||||||||||||||||| || || |||||||| Sbjct 4491151 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 4491210 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 4491211 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTAC 4491270 Query 288462 GAATATCTGCATTATG 288477 || || |||||| || Sbjct 4491271 AAAGATTTGCATTTTG 4491286 >seq85 Length=6926877 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || ||||||||||| | ||||| || || ||| Sbjct 1866492 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAG 1866433 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || | ||||| ||||| || || ||||| || || || || || Sbjct 1866432 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 1866373 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | |||||||| || ||||| ||||| ||||||| ||||| ||| Sbjct 1866372 TCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACG 1866313 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1866312 AAGATCTGCATT 1866301 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || ||||||||||| | ||||| || || ||| Sbjct 1866036 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAG 1865977 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| || || ||||| || || || || || Sbjct 1865976 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 1865917 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||||| || || ||||| || || || || | || || || Sbjct 1865916 TCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACA 1865857 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1865856 AAGATCTGCATT 1865845 >seq54 Length=15836216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| ||||| ||||| || | ||| ||| || || || | ||||| ||||| || || Sbjct 984832 TTTCTGGATGTTATACTCTGAGAGACTGCAGCCATCCTCCAGATGTTTGCCTGCAAAAAT 984773 Query 288345 CAGACGCTGTTGAGAATCTG-GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||||||||| || | | | |||| || || || ||||||||||| | ||| || || | Sbjct 984772 CAGACGCTGCTGGGCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGTTTTGACATTCT 984713 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | || || | | || || || ||||| ||||| || |||| ||||| | | Sbjct 984712 CGATGGTGTCACTGGGCTTGACCTCAAGGGTGATGGTCTTGCCCATCAGGGTCTTCATGT 984653 Query 288464 ATATCTGCAT 288473 | || ||||| Sbjct 984652 AGATTTGCAT 984643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179618851114656