Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq93 116 4e-21 seq85 111 2e-19 seq109 91.5 2e-13 seq48 91.5 2e-13 seq3 91.5 2e-13 seq34 89.7 6e-13 seq96 82.4 8e-11 seq8 82.4 8e-11 >seq93 Length=5582385 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 4491092 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAG 4491151 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | ||||||||||| || | || || || ||| ||| || || | || Sbjct 4491152 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4491211 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | ||||| || | |||||||| ||||| || || ||||||||| Sbjct 4491212 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACA 4491271 Query 42198 AAGATTTGCATTTT 42211 |||||||||||||| Sbjct 4491272 AAGATTTGCATTTT 4491285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| ||||| || | || || |||||||| || || || Sbjct 4490863 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 4490922 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | || || || ||| ||| || || | | Sbjct 4490923 GATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTT 4490982 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 4490983 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4491042 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 4491043 GAAGATCTGCAT 4491054 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||| |||| || ||| || || || ||||| |||| Sbjct 4490599 ACCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 4490658 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 4490659 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 4490718 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || ||| ||| || || | || | | ||||| || | ||||| Sbjct 4490719 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 4490778 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 4490779 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 >seq85 Length=6926877 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | |||| |||| ||| |||||| || || ||||| |||| | Sbjct 1866072 CCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1866013 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || ||||| || || || || || || | ||||||||| | || Sbjct 1866012 AGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1865953 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||| ||| ||| |||| || | | ||||| || | || || Sbjct 1865952 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 1865893 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | ||||||||||| ||||||| || || |||||||| |||||| || Sbjct 1865892 TCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATTGTC 1865842 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1856840 TCTCCCCGTCGGGTAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1856781 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1856780 ATACTAACGAGGA 1856768 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1854269 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1854210 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1854209 TACTAACGAGGA 1854198 >seq109 Length=3474990 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 ||| | |||| || | | |||||||||| ||||||||||||||||||||| ||||||| Sbjct 2998613 AATATCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 2998672 Query 57061 CCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 2998673 CCACTATACTAACGAGGA 2998690 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2418371 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2418430 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2418431 TACTAACGAGGA 2418442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 887949 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 887890 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 887889 ATACTAACGAGGAGTG 887874 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| |||||||||| || Sbjct 2899166 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCATTA 2899107 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2899106 TACTAACGAGGA 2899095 >seq48 Length=18382006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 12272411 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12272470 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 12272471 ATACTAACGAGGA 12272483 >seq3 Length=107953029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/175 (72%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 42036 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 42095 |||| ||||| || | || || ||||||||||| ||||| ||||| | ||||||||| Sbjct 38816819 TCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCA 38816878 Query 42096 GCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 42155 | || | || || || ||| |||| || || | ||| | ||||| || | | Sbjct 38816879 GGAGGGATGCCTTCTTTATCC-TGATCTTAGCCTTTAAAGTCTCAGTGGTGTCACTGGGT 38816937 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 ||||| || | |||||||| ||||| | || ||||||| ||||||||||||| Sbjct 38816938 TCCACCTCCAGGGTGATGGTCTTGCCATTCAGGGTCTTTATGAAGATTTGCATTT 38816992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 90518859 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 90518800 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90518799 TACTAACGAGGA 90518788 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 93553189 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 93553130 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 93553129 TACTAACGAGGAT 93553117 >seq34 Length=27469976 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10978372 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10978313 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 10978312 TACTAACGAGGA 10978301 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11023136 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11023077 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11023076 TACTAACGAGGA 11023065 >seq96 Length=5265885 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||| Sbjct 5135271 AATCGAACCCTGGTCTCCCGGGTGACAGGCAGGGATACTCACCACTATACTAATGAGGAT 5135330 >seq8 Length=93792748 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| |||||||| |||||||||||| | |||||||||||||||| |||||| Sbjct 90255933 AATCGAACCCCGGTCTCCCACGTGACAGGCGGGGAAACTCACCACTATACTAACGAGGAC 90255992 Query 57080 TGAATATATA 57089 | |||||| Sbjct 90255993 GGCGTATATA 90256002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196829543680