Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq93 147 2e-30 seq72 109 5e-19 >seq93 Length=5582385 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | |||||||| || || |||||||| || | | || || |||| Sbjct 4491070 AAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTC 4491129 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| |||||||||||||||||| |||||||| || Sbjct 4491130 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATC 4491189 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 4491190 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4491249 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || ||||| || ||||||||||| Sbjct 4491250 CTTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTT 4491285 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| || |||||||| || | | ||||| | || Sbjct 4490386 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 4490445 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||||||||| |||||||| |||||||| || Sbjct 4490446 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC 4490505 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || |||| || |||||||| | || | ||| Sbjct 4490506 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 4490565 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 4490566 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| || |||||||| || | | ||||| | || Sbjct 4490614 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 4490673 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| |||||||||||||||||| |||||||| || Sbjct 4490674 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATC 4490733 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 4490734 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4490793 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 4490794 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| || || || |||||||| || | | ||||| | || Sbjct 4490842 AAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 4490901 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| |||||||||||||||||| |||||||| || Sbjct 4490902 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATC 4490961 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 4490962 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4491021 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 4491022 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 >seq72 Length=11040415 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| ||| || ||||||||||||||||| || | | ||||| | ||||| Sbjct 6999969 CACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTC 7000028 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || || ||||| ||| | || || | ||||||||| |||||||||||||| || || | Sbjct 7000029 CAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATCCCG 7000088 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| || | ||||| || || | || | ||| | |||||| Sbjct 7000089 AATCTTGGCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGGTCTT 7000148 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | | || |||| || ||| |||||||| Sbjct 7000149 TTCCATTAGGGTATTTATGACAATCTGCATTTT 7000181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630110442880