Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq85 89.7 5e-13 seq72 84.2 2e-11 >seq85 Length=6926877 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || || ||| || |||||||| || Sbjct 1866270 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTCCCG 1866211 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || ||||| |||||||||||||| ||| || |||| Sbjct 1866210 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTG 1866151 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| ||||| | ||| | || || ||||||| || Sbjct 1866150 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTCTTACCGGTCAAGGTC 1866091 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 1866090 TTCACGAAGATCTGCAT 1866074 >seq72 Length=11040415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||| | ||| | ||| |||||||||||||| ||||| || || |||| ||| Sbjct 6999966 CAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATC 7000025 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || || ||||| ||||| |||||| || |||||| || ||||| || || ||||| || Sbjct 7000026 TTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATC 7000085 Query 127021 C 127021 | Sbjct 7000086 C 7000086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486820276480