Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 165 1e-35 seq7 122 1e-22 >seq17 Length=51904812 Score = 165 bits (182), Expect = 1e-35 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| |||| | ||||| |||||||| || || ||||| ||||| || | Sbjct 13372879 AACACTGAATGCGGTGTAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATTGA 13372820 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || ||||| || || || || ||||| || |||||||| Sbjct 13372819 GGCTGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTT 13372760 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || ||||||| ||||||||||| || || || ||||| || | Sbjct 13372759 AGGAGAACATATAGTATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCCAGTTCTAC 13372700 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||||||||||||| | ||||| || ||||| || | | | ||| ||||| Sbjct 13372699 CATGGTCTCACCGAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAGAG 13372640 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 ||| | ||| || | ||| |||||||| | || ||||| ||||| || || ||||| || Sbjct 13372639 TTCCATAGCATCAATGTCACCATAGAGCTCCTCTAACTCTGCAGCCATTTCTTTCTCTCC 13372580 Query 9175 T 9175 | Sbjct 13372579 T 13372579 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||||||||||||| ||||||| || || || ||| | || || ||||| ||| Sbjct 13371122 GTCTGGAACAACTGCTCGTCGTCCCATTCTGGATGCTCCTGTCTAAGCACGTCGCACACC 13371063 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||| | ||||| || ||||| |||||||| | || ||||| | ||||| Sbjct 13371062 CTGTTATGTTCCCGAAGCCAGATTGTGGCATACATCATCAGGCCAGGCACCAGCCCAAAG 13371003 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | |||| || | ||| | Sbjct 13371002 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGCGGGTAGATCATCTCT 13370943 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| ||||||||||| ||||| |||||||| || || ||||| Sbjct 13370942 GCCTGAGTCTCTTTGACAGTGGGAGGATACATCTCTCCATCAAT 13370899 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| ||||||||| | |||||| | ||||||||| ||| ||| | || Sbjct 13369944 TCTCACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 13369885 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || | ||||||| ||||||||||||||||| Sbjct 13369884 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGTAAACATCATATTGGTGCCCTGGGGATC 13369825 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || || ||| |||||||||| | | ||||| || || Sbjct 13369824 TGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAG 13369768 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||||||||| | |||||||| |||||| |||| || ||||| || | ||| || || Sbjct 13369155 ACCTTTCACCCCCATGGGAGTAGGACAGTCATGAGGTACAGGAGGAAGGGCTCTGGTGTA 13369096 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || ||||| ||||||||||| || ||||| || | | || || ||| Sbjct 13369095 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGAACATTATAAGTCGG 13369036 Query 10509 GGGACTGTCAATCA 10522 || || ||||||| Sbjct 13369035 CGGGCTATCAATCA 13369022 >seq7 Length=94539749 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| |||||| || ||||| || |||||||| ||||||||| Sbjct 36641619 GTGGCAGTCTTGACAATGTTGAAACCTGTCTCGCCGCCAAATGTGCTGGGCTTCCAGTAC 36641678 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 36641679 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 36641738 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | || Sbjct 36641739 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGATA 36641797 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| || ||||| || |||||||||| || || ||||||||||| Sbjct 36641798 GAACTCCATGGCATCGATATCACCATATAGCTCTTCCAACTCAGCTGCCATCTCCTTCTC 36641857 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 36641858 TCCTACAAG 36641866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723706722396800