Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq93 158 3e-33 seq85 138 3e-27 seq72 111 4e-19 seq24 95.1 3e-14 seq3 95.1 3e-14 >seq93 Length=5582385 Score = 158 bits (174), Expect = 3e-33 Identities = 169/223 (76%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||| ||||| |||| ||||||||||| | ||| | || ||| Sbjct 4491071 AGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCT 4491130 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 4491131 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4491190 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 4491191 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4491250 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCT 199640 || || || || || || ||||| ||||| |||||| |||| Sbjct 4491251 TTGCCAGTCAGGGTCTTTACAAAGATTTG---CATTTTGGCCT 4491290 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| ||||||||||| | ||| | |||||| Sbjct 4490843 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490902 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 4490903 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4490962 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || |||| ||||| ||| Sbjct 4490963 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4491022 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 4491023 TTGCCAGTCAGGGTCTTCACGAAGATCTG 4491051 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| ||||||||||| | ||| | |||||| Sbjct 4490387 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490446 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 4490447 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 4490506 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 4490507 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 4490566 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 4490567 TTGCCAGTCAGGGTCTTCACGAAGATCTG 4490595 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| ||||||||||| | ||| | |||||| Sbjct 4490615 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490674 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 4490675 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4490734 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || |||| ||||| ||| Sbjct 4490735 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4490794 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 4490795 TTGCCAGTCAGGGTCTTCACGAAGATCTG 4490823 >seq85 Length=6926877 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| || || | ||| ||| Sbjct 1866057 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1865998 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| || | ||||||||| ||| || ||||| || Sbjct 1865997 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1865938 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || |||| |||||| | | ||||| || | ||||| || Sbjct 1865937 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTT 1865878 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | ||||||||||| || || Sbjct 1865877 TTACCCGTTAAGGTTTTCACAAAGATCTG 1865849 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| |||||| | ||||||| Sbjct 1866285 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCT 1866226 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| || | ||||||||| ||| ||| || || || Sbjct 1866225 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 1866166 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||||| || | || || ||| Sbjct 1866165 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTC 1866106 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 1866105 TTACCGGTCAAGGTCTTCACGAAGATCTG 1866077 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 1866741 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1866682 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| ||| || ||||| || Sbjct 1866681 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866622 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||||| || | ||||| ||| Sbjct 1866621 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTC 1866562 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| || || Sbjct 1866561 TTACCAGTCAAGGTCTTCACAAAGATCTG 1866533 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || ||||| ||||| || |||| ||||||||||| || ||| | |||||| Sbjct 1866970 CAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 1866911 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| | | ||||||||| ||| || ||||| || Sbjct 1866910 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1866851 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || |||| |||||| | | ||||| || | || || || Sbjct 1866850 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGTAATGGT 1866791 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || ||||| || || || Sbjct 1866790 CTTCCCAGTCAAGGTCTTCACGAAGATCTG 1866761 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| || || | ||| ||| Sbjct 1866513 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1866454 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| ||| || ||||| || Sbjct 1866453 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866394 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||||| || | ||||| ||| Sbjct 1866393 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTC 1866334 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 1866333 TTACCGGTCAAGGTCTTCACGAAGATCTG 1866305 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| || ||| ||||||||||| | |||||| | || |||||| ||||| Sbjct 1866200 CTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAACATCCAG 1866259 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || ||||| ||||| ||||| ||| Sbjct 1866260 AAGGAGTCCACTCTGCACCTGGTT 1866283 >seq72 Length=11040415 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| |||| ||||| || || || ||||| ||||| | ||||||||||| ||| || | Sbjct 6999959 GAAGGCTCAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGC 7000018 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| || || || || ||||| || | ||||||||| ||| |||||||| Sbjct 7000019 CTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTT 7000078 Query 199530 CTCGCTCCTGAATCTT 199545 | ||| ||||||| Sbjct 7000079 CCTTATCCCGAATCTT 7000094 >seq24 Length=42784276 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| ||||| ||||| || |||| ||||||||||| || || ||||| Sbjct 24274760 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGTCCATA 24274701 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCT 199535 ||||||||| || | || ||||||| | ||||| || || || |||| |||| | Sbjct 24274700 TTCCAGCTGTTTCCTAGCAAAGATGAACCTCTGCT-CTCAAGAGGGATGCCTTCCTCG-T 24274643 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 | || |||||| ||| || || |||||| | | |||||| || | |||| | Sbjct 24274642 CTTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGTTCTACTTCAAGAATGATTG 24274583 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || | || ||||| || || || Sbjct 24274582 TCTTACCAGTCAAGGTCTTCACGAAGATCTG 24274552 >seq3 Length=107953029 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||| || || |||||| |||| | || |||| ||||| | ||| | |||||| Sbjct 38816784 AGGATAACATGCAGAGTCAACTC----TAGATGTTGAGGTCAGAAAGAGTGCGGCCATCT 38816839 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||||||||| | ||||||||| ||| || |||||| ||| Sbjct 38816840 TCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 38816899 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| | | || |||||| | | ||| || |||| ||||| ||| Sbjct 38816900 TG-ATCTTAGCCTTTAAAGTCTCAGTGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTC 38816958 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCT 199640 || || | || || || | || ||||| ||||| | ||| Sbjct 38816959 TTGCCATTCAGGGTCTTTATGAAGATTTG---CATTTCAACCT 38816998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178886073197584