Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq93 143 3e-29 seq85 127 2e-24 >seq93 Length=5582385 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || ||||| || || || ||||| ||||||||| | || || ||| || Sbjct 4491285 AAAATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 4491226 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || ||||| || ||||| |||| Sbjct 4491225 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGA 4491167 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| |||| || || || ||||| Sbjct 4491166 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTGACTA 4491107 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| |||| ||||| |||| || || |||| || || Sbjct 4491106 CAACATCCAGAAGGAATCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGG 4491056 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4490826 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490767 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || ||||| || ||||| ||||||| Sbjct 4490766 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4490708 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || |||||||| Sbjct 4490707 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4490648 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| ||||| |||| || ||| |||| || || Sbjct 4490647 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 4490600 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4491054 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4490995 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || ||||| || ||||| ||||||| Sbjct 4490994 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4490936 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || |||||||| Sbjct 4490935 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4490876 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| |||| || || |||| || || Sbjct 4490875 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGG 4490828 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4490598 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 4490539 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || ||||| | ||||| Sbjct 4490538 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 4490479 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 4490478 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4490419 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| || ||| |||| || ||| Sbjct 4490418 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTGAGGGGTGGC 4490371 >seq85 Length=6926877 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| | ||||| |||||||||||| | || || ||| ||| Sbjct 1865845 AATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTAGAGCCCAG 1865904 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 1865905 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1865964 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| |||| || ||||| |||||||| Sbjct 1865965 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866024 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || ||| ||||||| || Sbjct 1866025 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866072 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||||||| | || || ||| ||| Sbjct 1866301 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAAGTAGAGCCCAG 1866360 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 1866361 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866420 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| |||| || ||||| |||||||| Sbjct 1866421 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAA 1866480 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || ||| ||||||| || Sbjct 1866481 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866528 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||| ||| | || || ||| ||| Sbjct 1866073 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 1866132 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| ||||| ||||| | ||||| Sbjct 1866133 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 1866192 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | || || | |||||||| Sbjct 1866193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAA 1866252 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || ||| ||||||| || Sbjct 1866253 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 1866300 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||| ||| | || || ||| ||| Sbjct 1866757 AATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAG 1866816 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 1866817 CGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866876 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | || || || |||||||| Sbjct 1866877 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAA 1866936 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || |||||| |||| ||||| ||||| || || Sbjct 1866937 CATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 1866984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || || || || |||||| | || || ||| ||| Sbjct 1866529 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 1866588 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 1866589 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 1866648 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | || || || |||||||| Sbjct 1866649 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAA 1866708 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| ||||||| || Sbjct 1866709 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTGAGAGGGGG 1866756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158094919680