Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq40 168 3e-36 seq139 131 7e-25 seq7 96.9 1e-14 seq85 95.1 5e-14 seq72 84.2 9e-11 seq2 84.2 9e-11 >seq40 Length=22139007 Score = 168 bits (186), Expect = 3e-36 Identities = 401/598 (67%), Gaps = 6/598 (1%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| || || || || || |||||||| || ||||| || ||||| | | | || Sbjct 15768312 ATGACATCGTCCTGGTGGGTGGTTCTACTCGTATTCCCAAGATTCAGAAACTCCT-TCAG 15768370 Query 451956 CTTATTTTGGA-GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014 | | || | |||||| ||||| |||||| | ||||||||||| |||||||| || Sbjct 15768371 GATTTCTTCAATGGAAAAGAACTAAACAAGAGCATCAATCCTGATGAGGCTGTTGCTTAC 15768430 Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGG-TTCAGATGATGAAAAATTAGGAGATAT 452073 ||||| || || || ||||| || || | || || || |||||| | |||| | Sbjct 15768431 GGTGCAGCTGTCCAGGCAGCCATCTTATCTGGAGACAAAT-CTGAAAATGTTCAAGATTT 15768489 Query 452074 TCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 |||| | ||||| || ||||| || ||||| | ||||| ||||||||| | ||||| Sbjct 15768490 GTTGTTCTTGGATGTTACTCCTCTTTCCCTTGGTATCGAAACTGCTGGTGGAGTCATGAC 15768549 Query 452134 TAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193 || | || || || ||| | |||||| || ||| || || || | || Sbjct 15768550 TATCCTCATCAAGCGCAATACTACCATTCCTACAAAGCAGACACAGACCTTCACAACCTA 15768609 Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 ||| ||||| || || || ||||| || | |||||| ||| |||| | ||| Sbjct 15768610 CTCTGACAACCAGCCTGGCGTGCTCATTCAGGTTTATGAAGGTGAATGTGCCACGACCAA 15768669 Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313 ||| || || | || | ||| || | ||| |||||| || | || Sbjct 15768670 AGACAACAACTTGCCTGGCAAGTTTGAACTCACTGGCATACCTCCTGCACCCCGTGGTGT 15768729 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 |||||| ||||| | || | |||| ||||||| || ||||| |||||||| ||| || Sbjct 15768730 TCCTCAGATTGAGGTCACTTTTGATATTGATGCCAACGGTATCCTTAATGTTTCTGCTGT 15768789 Query 452374 TGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 || || |||||||| |||| || ||||| || |||||||| || |||||| Sbjct 15768790 GGACAAGAGTACTGGAAAA-GAGAACAAGATTACCATAACTAATGACAAGGGCCGTTTGA 15768848 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||||||| ||||| ||||| | ||||| || || | ||| | ||| ||||| Sbjct 15768849 GTAAAGAAGACATTGAGCGGATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAGGATGA 15768906 Score = 159 bits (176), Expect = 1e-33 Identities = 457/698 (65%), Gaps = 15/698 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| || |||| || ||||| ||||| | ||| | | || Sbjct 15767330 GCAGTTGGCATTGATCTTGGCACAACCTACTCCTGTGTGGGTGTCTTCCAGCACAGGAAA 15767389 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || |||||||| || || ||||| || || || || |||||| Sbjct 15767390 GTGGAGATAATTGCAAATGATCAGGGCAACCGAACCACCCCGAGCTGTGTTGCTTTTACT 15767449 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| | ||| | | | || | || || || ||||| ||| ||| ||| | Sbjct 15767450 GATACCGAACAATTGATTGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCCACCA 15767507 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 ||||||| | | |||| |||||| | ||||| | | || |||||||| | ||| || Sbjct 15767508 ACACAGTTTTTTATGCCAAACGTCTGATTGGATGAAGGTTTGATGATGCTGTTGTCCAGT 15767567 Query 451152 AAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | || ||| | ||| | || || || | ||| | |||| | | Sbjct 15767568 CTGATATGAAGCATTGGCCCTTCGTG----GTGGTGAACGATGCAGGCAGGCCCAAGGTC 15767623 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 ||||| | ||||| || || || |||| |||| | | || ||| | |||||||||||| Sbjct 15767624 CAAGTGGAATATAAGGGAGAGACCAAAAGTTTTTATTCAGAGGAAGTGTCATCTATGGTT 15767683 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 |||| || ||||| |||| |||||| || |||| | ||||| |||| || Sbjct 15767684 TTTACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGGAAAGACTGTTACCAATGCTGTT 15767743 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | ||||| || || || || ||||| | || || || || || |||||||| ||| Sbjct 15767744 GTCACTGTACCAGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACC 15767803 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 |||||||| | ||||| || |||| || || || || || || |||||| | || ||| Sbjct 15767804 ATTGCTGGCCTCAATGTGCTGAGAATCATCAACGAGCCAACTGCTGCTGCTATTGCTTAT 15767863 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||| | | |||| |||| | | | |||||||| || || Sbjct 15767864 GGTTTAGACAA---AAAGGTTGGTGCTGAAAGAAATGTGCTGATCTTTGATTTGGGAGGT 15767920 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| ||| || | || | || |||||||| | ||||| || || | || Sbjct 15767921 GGCACTTTCGATGTGTCAATCCTCACTATAGAAGATGGAATCTTTGAGGTCAAATCTACA 15767980 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || |||| || ||||| |||| || Sbjct 15767981 GCTGGAGACACCCACTTAGGCGGAGAAGACTTTGACAA 15768018 >seq139 Length=1900517 Score = 131 bits (144), Expect = 7e-25 Identities = 266/391 (68%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| |||| |||| |||| |||||| |||||||| |||||||| || ||||| Sbjct 1326771 TACAAAGGAGAAAATAAAGCTTTCTATCCTGAGGAAATTTCTTCTATGGTGCTGACTAAG 1326830 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTGT 451335 ||||| || || || || | | |||| | | | || || |||| || || || || Sbjct 1326831 ATGAAGGAGACTGCTGAGGCTTTT-TTGGGCCACTCTGTCACCAATGCTGTGATCACCGT 1326889 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || || ||||||||||| | ||||| || || || || |||||||| ||| || || Sbjct 1326890 GCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTTATAGCAGG 1326949 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 | ||||| || |||| || || ||||||||||| ||||| | || || || ||| Sbjct 1326950 ACTCAATGTGCTAAGAATCATCAACGAACCTACAGCTGCTGCCATTGCCTACGGTTTAG- 1327008 Query 451456 AAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || || | ||| | | | | | |||||| | |||||||| || Sbjct 1327009 ---ATAAAGGTGGTCAGGGAGAGCGACACGTCCTGATCTTTGATCTGGGTGGAGGCACGT 1327065 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| || | || | || || |||||| | ||||| || ||||| || ||| | Sbjct 1327066 TTGATGTGTCCATTCTGACTATAGATGATGGGATTTTTGAGGTGAAGGCGACAGCTGGCG 1327125 Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | || ||||| || || ||||| |||| || Sbjct 1327126 ACACCCATCTGGGTGGGGAAGACTTTGACAA 1327156 >seq7 Length=94539749 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| || || |||||||| Sbjct 32914889 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACC 32914948 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | |||||| | | || || ||||| || Sbjct 32914949 AAAGATGCTGGAACTATTGCTGGACTGAATGTTATGAGGATCATCAATGAGCC 32915001 >seq85 Length=6926877 Score = 95.1 bits (104), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||| ||||| || ||||| ||||| || || | Sbjct 1866073 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 1866132 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | || ||| || ||||| ||||| || ||||||||||| || Sbjct 1866133 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 1866192 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || || | |||||||| || ||||||||| | |||||| | || || || Sbjct 1866193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAA 1866252 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||| | || | | |||||||| Sbjct 1866253 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGG 1866297 >seq72 Length=11040415 Score = 84.2 bits (92), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAA-ACTATTACTCTTGATGTTGAATCAT 391107 |||| | ||| || | || || || | ||| ||| || || ||||| | ||||| | | Sbjct 7000179 AATGCAGATTGTCATAAATACCCTAA-TGGAAAAGACCATCACTCTCAAAATTGAACCCT 7000121 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 | ||| || ||| | | || || |||| ||||||||||||||||||||||| | Sbjct 7000120 CGAATACAATAGAAAATGTAAAGGCCAAGATTCGGGATAAGGAAGGAATTCCTCCTGACC 7000061 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 | || | | || || | || |||||||| ||||||||| | || ||| | || || | Sbjct 7000060 AGCAGGGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAGGCACCTTGTCTGACTACA 7000001 Query 391228 ATATTGATAAGGATGCAACACTTCA 391252 | ||| | || || |||| ||||| Sbjct 7000000 ACATTCAAAAAGAGTCAACGCTTCA 6999976 >seq2 Length=111286942 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| |||||| | ||||||||||| Sbjct 56073272 GCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGAGTGATTAATGAACCC 56073213 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| |||||||| || ||||| |||| || || |||| Sbjct 56073212 ACAGCTGCTGCTCTGGCCTATGGTCTAGACAAGTCTGAAGA 56073172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975658861726016