Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 89.7 6e-13 seq80 86.0 7e-12 >seq21 Length=46401353 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 116966 CGTCATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCC 117023 || ||||| ||| ||| || ||| || || |||| |||||| |||||||| |||||||| Sbjct 19710098 CGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCGAAGAAGTTAGTCTTCCC 19710039 Query 117024 ATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATTCT 117061 || || |||||| |||||||||||||||||||||| Sbjct 19710038 TTCCAGTGAAATGTTCTCCATAAAGTCAAATGGATTCT 19710001 >seq80 Length=8685383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| |||| | || ||||| || Sbjct 8324380 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCC 8324321 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| |||||| || || | ||| |||||||||||||| || || || Sbjct 8324320 CAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 8324261 Query 106612 CGTCTCCGTCTGTGACT 106628 || || ||||| |||| Sbjct 8324260 TGTTTCTGTCTGAGACT 8324244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963454564480