Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq385 91.5 1e-13 seq1307 89.7 4e-13 >seq385 Length=90936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | || || | ||||||| Sbjct 58277 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAGGGCACCACCATGGCTG 58218 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| || || || || ||||| ||||| || ||| | | | Sbjct 58217 CCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 58158 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | |||| | || ||||| || | ||| || |||||||| |||||||| || Sbjct 58157 TCTGGTCCTCTCCGTCCCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGGG 58098 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | |||||||| Sbjct 58097 CCCAGCACCTCAGCGTGGCCTCACGGTCAG 58068 >seq1307 Length=8997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 799 ATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAG 858 || |||| || | |||| |||||||||| || || || || |||| | |||||| Sbjct 404 ATCTGAGCGGCCGTGTCCGCCGCGGTCCAGGAGCTCAGGTCCTCGTTCAGGGCGATGTAG 345 Query 859 TCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACA 918 || ||| |||||||| || || |||||| || |||||| || || |||||||| Sbjct 344 TCGGCGCCGTCATAGGCGTGCTGCTGGTAGCCACGGAGGAGGCGCCCGTCGGGCCCCACT 285 Query 919 ACACAGCCGGACATCCATTGGAGGGTATG 947 ||||||||||||||| |||| ||| || Sbjct 284 TCACAGCCGGACATCCTCTGGATGGTGTG 256 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | || || | ||||||| Sbjct 1478 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAGGGCACCACCATGGCTG 1419 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| || || || || ||||| ||||| || ||| | | | Sbjct 1418 CCCACTTCTGGAAGGTTCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 1359 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGC-CAGTG 527 || | | |||| | | ||||| || | ||| || |||||||||||||||| ||| | Sbjct 1358 TCTGGTCCTCTCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGATAGAAGCTCAG-G 1300 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||||| || || || | | |||||||| Sbjct 1299 GCCCAGCACCGCAGCGTGGCCTCACGGTCAG 1269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397735798576512