Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq85 156 9e-33 seq93 149 1e-30 seq3 111 3e-19 seq72 107 4e-18 seq24 107 4e-18 >seq85 Length=6926877 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||||||||| || || || ||||| || | | ||| | |||||||| Sbjct 1866283 AACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTC 1866224 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || ||||| ||||||||||| || |||||||| Sbjct 1866223 CAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 1866164 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||| |||||||||||||| || ||||||||||||| ||||| Sbjct 1866163 GATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTCTT 1866104 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || ||||| | |||||| Sbjct 1866103 ACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | ||||| | |||||||| Sbjct 1866738 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1866679 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| ||||| |||||||| |||||||| Sbjct 1866678 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1866619 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| |||||||||||||| || ||||||||||| | ||||| Sbjct 1866618 ATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTCTTA 1866559 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | |||||| Sbjct 1866558 CCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||||||||| || || ||||| || | ||||| | |||||||| Sbjct 1866966 ACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1866907 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| ||||| |||||||| |||||||| Sbjct 1866906 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1866847 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||| ||||| |||||||| || || |||||||||| ||||| Sbjct 1866846 ATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGTAATGGTCTTC 1866787 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || ||||| | |||||| Sbjct 1866786 CCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||||||||| || || || ||||| || | || || | || ||||| Sbjct 1866511 AACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTC 1866452 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| | | || ||||| ||||| |||||||| |||||||| Sbjct 1866451 CAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 1866392 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||| |||||||||||||| || ||||||||||| | ||||| Sbjct 1866391 GATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTCTT 1866332 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || ||||| | |||||| Sbjct 1866331 ACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||||||||| || || || ||||| || | || || | || ||||| Sbjct 1866055 AACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTC 1865996 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || ||||| ||||| |||||||| |||||||| Sbjct 1865995 CAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 1865936 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || ||| |||||| ||||| |||||||| ||| || || |||||||| | || Sbjct 1865935 GATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCTACCTCAAGGGTGATGGT 1865879 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || ||||| || || | |||||| Sbjct 1865878 TTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 >seq93 Length=5582385 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| || | |||||| | |||||||| Sbjct 4490618 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4490677 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||||||||||||||| || || Sbjct 4490678 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGG 4490737 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| ||||| || ||||| | ||| Sbjct 4490738 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 4490794 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 4490795 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| || | |||||| | |||||||| Sbjct 4490390 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4490449 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||||||||||||||| || || Sbjct 4490450 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 4490509 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| |||||||| ||||| | ||| Sbjct 4490510 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATGGTC 4490566 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 4490567 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | |||||||| Sbjct 4490846 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4490905 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||||||||||||||| || || Sbjct 4490906 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGG 4490965 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||||||||| ||| ||||| || ||||| | ||| Sbjct 4490966 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 4491022 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 4491023 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || || || || || || ||||| || | |||||| | || ||||| Sbjct 4491074 ACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCTTCC 4491133 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||||||||||||||| || || Sbjct 4491134 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGG 4491193 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 4491194 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 4491250 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || ||||| || | |||||||| Sbjct 4491251 TTGCCAGTCAGGGTCTTTACAAAGATTTGCATTT 4491284 >seq3 Length=107953029 Score = 111 bits (122), Expect = 3e-19 Identities = 130/173 (75%), Gaps = 7/173 (4%) Strand=Plus/Plus Query 194973 AAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG 195032 |||||| | |||||||| |||||||||||||||||||| || | || ||||| ||||| Sbjct 38816824 AAGAGTGCGGCCATCTTCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCAGGAGG 38816883 Query 195033 AATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTC 195089 ||||||||||| || || || || ||| | ||||| ||||||| ||| ||| Sbjct 38816884 GATGCCTTCTTTATCCTG-ATCTTAGCCTTTAAAGTCTCAGTGGTGTC---ACTGGGTTC 38816939 Query 195090 CACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || ||||| | ||||| || ||| || |||| ||| | |||||||| Sbjct 38816940 CACCTCCAGGGTGATGGTCTTGCCATTCAGGGTCTTTATGAAGATTTGCATTT 38816992 >seq72 Length=11040415 Score = 107 bits (118), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 || ||||| ||||| ||||| || |||||||||||||| ||||| || | |||| || | Sbjct 6999961 AGGCTCAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAG-GTGCC 7000019 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || || || || || ||||| |||| || ||||| |||||||| ||||| Sbjct 7000020 TCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTC 7000079 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || |||| || ||| || || || || || | ||| ||| | || || || Sbjct 7000080 CTTATCCCGAATCTTGGCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGT 7000139 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | |||||| | | | || |||| || | ||||||| Sbjct 7000140 GATGGTCTTTTCCATTAGGGTATTTATGACAATCTGCATTT 7000180 >seq24 Length=42784276 Score = 107 bits (118), Expect = 4e-18 Identities = 153/213 (72%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | || || |||| ||| Sbjct 24274756 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGTCCATATTCC 24274697 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || | || ||||| | | || | || |||| |||||||| | |||||| Sbjct 24274696 AGCTGTTTCCTAGCAAAGATGAACCTCTGCT-CTCAAGAGGGATGCCTTCCTCGTCTTGG 24274638 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| |||||| ||||||| ||| ||| |||||||| | | ||| Sbjct 24274637 ATCTTTGCCTTGACATTCTCAGTGGTGTC---ACTGGGTTCTACTTCAAGAATGATTGTC 24274581 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || ||||| | |||||| Sbjct 24274580 TTACCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109448165771984