Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq85 118 7e-22 seq93 95.1 8e-15 >seq85 Length=6926877 Score = 118 bits (130), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | | ||||| ||| | ||| || ||||| ||||| ||||| | Sbjct 1866074 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866015 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | ||| | || ||||||||||| |||||||| || || | |||||||| | | Sbjct 1866014 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 1865955 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||||| ||||| || || || | |||| || ||| Sbjct 1865954 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTC 1865897 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| |||||||| ||||| | || ||||||||||||||||| Sbjct 1865896 TACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 1865846 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| || | ||| |||||||| ||||| ||||| || Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | || | || ||| | Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCTA 1866807 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 1866806 CCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 1866758 Score = 105 bits (116), Expect = 4e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | | ||||| ||| | ||| || ||||| ||||| ||||| | Sbjct 1866302 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866243 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| ||||||||||| |||||||| || || | |||||||| | | Sbjct 1866242 ACAAAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 1866183 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | ||||||||||| ||||| ||||| || || || | || | || ||| Sbjct 1866182 GAATGCCCTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTC 1866125 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 1866124 TACTTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866074 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | | ||||| ||| | ||| || ||||| ||||| ||||| | Sbjct 1866530 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866471 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | ||| | || ||||||||||| |||||||| || | | |||||||| | | Sbjct 1866470 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 1866411 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||||| ||||| || || || | || | || ||| Sbjct 1866410 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTC 1866353 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || | |||||||| ||||||||||| Sbjct 1866352 TACTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866302 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | ||| |||| ||| Sbjct 1866738 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1866679 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | |||||||| | || | || |||||||| Sbjct 1866678 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 1866619 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || || | ||| || || | Sbjct 1866618 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTCT 1866561 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||||||||||||||| Sbjct 1866560 TACCAGTCAAGGTCTTCACAAAGATCTGCAT 1866530 >seq93 Length=5582385 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 4490636 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490695 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || ||| Sbjct 4490696 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4490755 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 4490756 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4490815 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 4490816 AAGATCTGCATA 4490827 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 4490408 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490467 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || || || Sbjct 4490468 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 4490525 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 4490526 TCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 4490585 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 4490586 CGAAGATCTGCATA 4490599 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 4490864 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 4490923 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || ||| Sbjct 4490924 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 4490983 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 4490984 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4491043 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 4491044 AAGATCTGCATA 4491055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624294377856